Factsheet for Solyc03g007950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024595	Potato	cytosol	83.94	82.18
KRG91587	Soybean	cytosol, extracellular, plastid	34.69	66.39
KRH35240	Soybean	extracellular	65.1	64.54
KRH35238	Soybean	extracellular	64.03	64.16
KRH35239	Soybean	extracellular, plasma membrane, plastid	65.74	63.96
Solyc08g081480.2.1	Tomato	extracellular	65.31	63.15
Solyc01g094970.2.1	Tomato	extracellular	54.18	62.16
KRH38380	Soybean	extracellular	62.31	61.13
KRH08861	Soybean	extracellular	62.1	60.8
AT3G48950.1	Thale cress	extracellular	59.53	59.28
CDY05885	Canola	extracellular	57.82	58.19
Solyc05g049980.2.1	Tomato	extracellular	60.39	58.02
Bra018023.1-P	Field mustard	extracellular	57.82	57.57
CDY05907	Canola	cytosol	53.96	57.53
Bra018004.1-P	Field mustard	cytosol	53.75	57.44
AT2G23900.1	Thale cress	extracellular	57.6	56.39
CDY08113	Canola	extracellular	54.39	55.7
CDY20264	Canola	extracellular	55.89	54.6
CDY39678	Canola	extracellular	55.46	54.18
CDY08095	Canola	extracellular, plasma membrane	57.39	54.14
VIT_16s0050g01120.t01	Wine grape	cytosol	18.84	47.06
Solyc06g009790.2.1	Tomato	extracellular	40.04	40.92
Solyc08g082170.2.1	Tomato	nucleus	40.69	40.69
Solyc09g075460.2.1	Tomato	extracellular	41.54	40.42
Solyc07g042160.2.1	Tomato	nucleus	40.69	38.46
Solyc12g009210.1.1	Tomato	nucleus	40.69	38.38
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	40.04	38.32
Solyc03g117750.2.1	Tomato	extracellular, golgi	39.61	37.99
Bra032138.1-P	Field mustard	cytosol	55.46	32.38
Solyc06g030520.1.1	Tomato	cytosol	7.28	29.82
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	65.1	28.92
Solyc03g051770.2.1	Tomato	cytosol	14.13	20.95

Protein Annotations

EnsemblPlants:Solyc03g007950.2.1	EnsemblPlantsGene:Solyc03g007950.2	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	PFAM:PF00295
SignalP:SignalP-noTM	SUPFAM:SSF51126	UniParc:UPI0002768331	UniProt:K4BEL6	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr3:-:2439038..2441907

Molecular Weight (calculated)

50957.1 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.042

Length

467 amino acids

Sequence
(BLAST)

001: MELYHKSTCH FLGKLIIALT WGILCLRAAE CIEYEALSCR KHTALLTDFG GKGDGKTSNT EAFRKAIHEL SKFATDGGAQ LIVPPGKWLT GPFNLTSKFT
101: LYIHQDAVLL VSQDEAEWDL IPPLPSYGIG RDNPGPRFIS FIFGTNLTDV VITGGNGTID GQGQLWWTKF RQGQMKNTRP YMIEIMFSDH VQISNLTLIN
201: SPSWNVHPIY SSFVIINGLT ILAPFHAPNT DGIDPDSCSN TRIEDCYIVS GDDCIAVKSG YDEYGIAFGM PTKHLIIRNL TCISPSSAVI ALGSEMSGGI
301: QDVRAENIGA IGSESGLRIK TAIGRGAYVK DVFVRGMTLQ TMKYTFWITG DYGAHPDDHY DRKAIPVIQG INIKDTVAKN VTIAGKLAGI DGDTFNGICL
401: SNVAIEMSQQ ANQLPWNCSN IKGVSSQVTP QPCALLPHKK IDCPFPTDTL PVDNIQFQTC AAATTMH

Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)

001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.