Factsheet for Solyc03g117750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 3
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036866	Potato	extracellular, golgi	96.92	96.92
GSMUA_Achr3P10280_001	Banana	mitochondrion	66.94	68.06
GSMUA_Achr9P18190_001	Banana	mitochondrion	67.97	67.41
GSMUA_Achr5P22120_001	Banana	extracellular	67.97	67.28
Solyc12g009210.1.1	Tomato	nucleus	67.97	66.87
Solyc07g042160.2.1	Tomato	nucleus	67.76	66.8
AT3G42950.1	Thale cress	extracellular, golgi	66.12	66.53
GSMUA_Achr11P...	Banana	mitochondrion	65.91	65.38
CDY53228	Canola	extracellular	14.99	65.18
CDY27797	Canola	extracellular, mitochondrion, plastid	66.74	64.87
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	66.53	64.54
CDY41934	Canola	extracellular, mitochondrion, plastid	66.32	64.34
Os02t0781000-01	Rice	extracellular	36.96	63.16
Zm00001d052103_P001	Maize	plasma membrane	62.83	61.82
EES05901	Sorghum	extracellular, golgi	63.24	61.6
TraesCS6B01G371200.2	Wheat	mitochondrion	62.22	61.21
TraesCS6A01G340000.1	Wheat	mitochondrion	62.01	61.01
TraesCS6D01G320600.1	Wheat	mitochondrion	61.6	60.61
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	61.81	60.32
KRH55874	Soybean	cytosol	8.01	59.09
Solyc08g082170.2.1	Tomato	nucleus	42.09	43.9
Solyc01g094970.2.1	Tomato	extracellular	34.29	41.03
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	40.04	39.96
Solyc06g009790.2.1	Tomato	extracellular	37.37	39.82
Solyc03g007950.2.1	Tomato	extracellular	37.99	39.61
Solyc05g049980.2.1	Tomato	extracellular	38.19	38.27
Solyc08g081480.2.1	Tomato	extracellular	37.78	38.1
Solyc09g075460.2.1	Tomato	extracellular	37.37	37.92
Solyc03g051770.2.1	Tomato	cytosol	13.55	20.95
Solyc06g030520.1.1	Tomato	cytosol	4.31	18.42

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:K4BLS6	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc03g117750.2	EnsemblPlants:Solyc03g117750.2.1
TMHMM:TMhelix	UniParc:UPI000276787E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:66789853..66794315

Molecular Weight (calculated)

54840.3 Da

IEP (calculated)

9.540

GRAVY (calculated)

-0.172

Length

487 amino acids

Sequence
(BLAST)

001: MADSFKLQHR KLEYRRLIPA FLLSHYTLLT ILWIVGFILI VIWQRTAVER LLIYRGLASP TRPIPMLRPL VFNLSDFGAV GDGVTVNTKA FETAISEIRK
101: RGGGQLNVEP GHWLTAPFNL TSHMTLFLAE NAVILGIDDE NYWPLLPPLP SYGYGRERRG PRYGSLIHGQ NLKDVVITGH NGTINGQGRS WWEKYRKKLL
201: NHTRGPLLQL MWSRDIYISD VTFRDSPFWT LHPYDCQNVV IRNVTILAPL TEAPNTDGID PDSCVDMVIE DSYISVGDDG VAIKSGWDQY GIAYSRPSSN
301: ITIRNLIVRS MISAGVSIGS EMSGGVSNII VENLLIWNSK RGIRIKTSPG RGGHIRHVIY RNLTLQNVRV GIVIKTDYNE HPDEGYDPNA LPVIKDISFT
401: GIRGQGVRIP ARIYGSAEIP VQNITFQDMS VGITYKKKRI FQCSFVQGRV IGKIFPAPCE NLDWYDDGGK LIRQSIKKNT KDLDYDG

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.