Factsheet for VIT_13s0139g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3
plasma membrane 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular, plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00260.t01	Wine grape	extracellular	63.54	12.71
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	54.17	10.86
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	46.88	9.89
VIT_07s0005g00890.t01	Wine grape	extracellular	44.79	9.01
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	42.71	8.8
VIT_02s0025g01330.t01	Wine grape	extracellular	39.58	8.5
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	39.58	7.71
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	37.5	6.96
Zm00001d020615_P001	Maize	plastid	35.42	6.59
TraesCS5D01G219200.1	Wheat	plastid	35.42	6.4
TraesCS5B01G210900.1	Wheat	plastid	35.42	6.4
TraesCS5A01G212900.1	Wheat	plastid	35.42	6.4
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	69.79	6.37
EER96790	Sorghum	plastid	34.38	6.37
Os09t0439400-01	Rice	plastid	33.33	6.08
HORVU5Hr1G062220.2	Barley	extracellular	33.33	6.03
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	23.96	4.78
VIT_16s0050g01120.t01	Wine grape	cytosol	8.33	4.28
PGSC0003DMT400041391	Potato	cytosol	1.04	0.6
VIT_05s0077g01740.t01	Wine grape	nucleus	1.04	0.42
VIT_00s2630g00010.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_13s0139g00110	EMBL:FN596255	EnsemblPlants:VIT_13s0139g00110.t01	EnsemblPlantsGene:VIT_13s0139g00110	Gene3D:2.160.20.10	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF17	ProteinID:CCB58657	ProteinID:CCB58657.1
SUPFAM:SSF51126	UniParc:UPI0002109C31	UniProt:F6HVE5	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr13:+:20340204..20344362

Molecular Weight (calculated)

10249.4 Da

IEP (calculated)

8.503

GRAVY (calculated)

0.048

Length

96 amino acids

Sequence
(BLAST)

1: MIVRVAECGR ASSVEYLAIN CWKHSAVLTN FGGNGDGKKM KIKAFKSAID HLSECASDGG AEPIVPPGKW LTGSFNLTSH FTLYVHKDAV ILGGQV

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.