Factsheet for PGSC0003DMT400041391

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094734	Potato	cytosol	18.67	29.52
PGSC0003DMT400007594	Potato	extracellular	79.52	26.67
PGSC0003DMT400036866	Potato	extracellular, golgi	68.07	23.2
EER96790	Sorghum	plastid	71.08	22.78
Zm00001d020615_P001	Maize	plastid	69.88	22.48
Os09t0439400-01	Rice	plastid	69.88	22.05
HORVU5Hr1G062220.2	Barley	extracellular	70.48	22.03
TraesCS5D01G219200.1	Wheat	plastid	70.48	22.03
TraesCS5B01G210900.1	Wheat	plastid	70.48	22.03
TraesCS5A01G212900.1	Wheat	plastid	69.88	21.85
PGSC0003DMT400031687	Potato	extracellular	31.33	11.63
PGSC0003DMT400032104	Potato	extracellular	33.13	11.39
PGSC0003DMT400018848	Potato	extracellular	31.33	11.38
PGSC0003DMT400065330	Potato	nucleus	13.86	11.22
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	31.33	10.7
PGSC0003DMT400081328	Potato	extracellular	27.11	9.8
PGSC0003DMT400055769	Potato	extracellular	27.71	9.64
PGSC0003DMT400024595	Potato	cytosol	27.11	9.43
PGSC0003DMT400000538	Potato	extracellular	25.3	8.84
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	13.25	4.62
VIT_13s0139g00110.t01	Wine grape	cytosol	0.6	1.04

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M1BBB6
PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400016038	PGSC:PGSC0003DMG400016038	EnsemblPlants:PGSC0003DMT400041391	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000296F99D

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400016038]

Coordinates

chr7:+:39471863..39472700

Molecular Weight (calculated)

18544.1 Da

IEP (calculated)

9.380

GRAVY (calculated)

-0.318

Length

166 amino acids

Sequence
(BLAST)

001: MSGGVSNVTV ENVHVWNSRR AVRIKTAAGR GGYVRHITYR NLTFVNVRVG IVIKTDYNEH PAGEFNPKAL PVLEDISYTS IHGEGVRVPV RIHGNSEIPV
101: KNITIRDMSV GITYKKKHIF QCSHVQGRVI GTVFPAPCEN LDLYDEQGHL VRRSGSQNAS DIDYDF

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.