Factsheet for PGSC0003DMT400030711

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, nucleus

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 1
plasma membrane 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	97.53	97.13
CDX75352	Canola	extracellular	64.2	66.1
Bra011440.1-P	Field mustard	extracellular	63.99	65.61
CDX68976	Canola	extracellular	63.37	65.39
CDY46115	Canola	extracellular	63.37	65.12
AT4G33440.1	Thale cress	extracellular	63.58	65.05
CDX72404	Canola	extracellular	63.17	64.9
Bra037005.1-P	Field mustard	extracellular	63.17	64.36
KRH53903	Soybean	extracellular, plasma membrane, plastid	62.96	64.15
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	66.46	62.48
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	53.29	58.6
Os08t0107300-00	Rice	extracellular, mitochondrion	56.17	56.64
TraesCS7D01G320900.1	Wheat	plastid	55.97	56.08
TraesCS7A01G323800.3	Wheat	plastid	55.97	56.08
TraesCS7B01G224700.1	Wheat	plastid	55.14	55.26
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	55.76	54.53
Zm00001d034990_P001	Maize	plasma membrane	54.32	53.55
PGSC0003DMT400031687	Potato	extracellular	44.86	48.77
Zm00001d021964_P001	Maize	cytosol	16.46	47.62
HORVU7Hr1G077560.12	Barley	plastid	46.71	47.0
PGSC0003DMT400018848	Potato	extracellular	41.15	43.76
PGSC0003DMT400081328	Potato	extracellular	41.15	43.57
PGSC0003DMT400000538	Potato	extracellular	41.98	42.95
PGSC0003DMT400032104	Potato	extracellular	41.98	42.24
PGSC0003DMT400055769	Potato	extracellular	40.74	41.51
PGSC0003DMT400007594	Potato	extracellular	41.77	41.01
PGSC0003DMT400036866	Potato	extracellular, golgi	39.92	39.84
PGSC0003DMT400024595	Potato	cytosol	38.27	38.99
PGSC0003DMT400094734	Potato	cytosol	7.82	36.19
PGSC0003DMT400041391	Potato	cytosol	10.7	31.33
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	19.14	19.54
PGSC0003DMT400065330	Potato	nucleus	7.61	18.05

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:M1AUN7	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400011767	PGSC:PGSC0003DMG400011767	EnsemblPlants:PGSC0003DMT400030711
PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0002957BAF	SEG:seg	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400011767]

Coordinates

chr6:-:42889180..42895570

Molecular Weight (calculated)

53788.0 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.081

Length

486 amino acids

Sequence
(BLAST)

001: MEEQTPILNL NRIKGGGGGI RRPLWVSVLI LFTVIALFSL HINREYSIFS IPLDFISGRV GLVSGYQQKS CSDFFKQVPA RKVVKSIRDF GGIGDGKTSN
101: TKAFQRAMEF MARFTESGGS QLVVPKGRWL TGSFNLTSNF TLFLEYGAVI LGSQDPNEWP IIDALPSYGR GRERLGARHI SLIHGNGLTN VVITGENGTV
201: DGQGKMWWDL WWNRTLVHTR GHLVELINSQ NILIQNLTLM NSPFWTIHPI YCRNIVIRNM TILAPLNAPN TDGIDADSSL NVCIEDCYIE SGDDLISVKS
301: GWDHYGMKMA RPSSNIIVRR VKGTTPTCSG VGIGSEMSGG VSNVLIEDLY VRDSAAGVRI KTDIGRGGYI VNITINNIRM ERVKVPIRFS RGANDHPDEK
401: WDPKALPKVR GIFISNVVSL ESKRPPLLVG IEEAPFEDIH MKNISLFGLA PSMKWNCEFI SGSSCSVFPA PCSQLLKNES TIQCPN

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.