Factsheet for PGSC0003DMT400031687

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082170.2.1	Tomato	nucleus	96.2	92.08
VIT_02s0025g01330.t01	Wine grape	extracellular	76.96	76.96
KRG99037	Soybean	nucleus	73.83	74.66
KRH45957	Soybean	extracellular	73.6	74.27
KRH14547	Soybean	extracellular	73.15	73.32
KRH73576	Soybean	extracellular	44.07	71.38
AT4G23820.1	Thale cress	extracellular, vacuole	70.47	70.95
Bra013734.1-P	Field mustard	extracellular, vacuole	70.02	70.5
GSMUA_Achr10P...	Banana	cytosol	64.88	70.39
CDY03516	Canola	extracellular, vacuole	69.8	70.27
CDY47619	Canola	extracellular, vacuole	69.8	70.27
GSMUA_Achr8P19900_001	Banana	cytosol	65.1	70.12
GSMUA_Achr6P14280_001	Banana	cytosol	62.86	69.9
CDX94222	Canola	extracellular	69.57	68.96
CDY10970	Canola	extracellular, vacuole	69.35	68.74
Bra019264.1-P	Field mustard	extracellular, vacuole	68.9	68.29
Os01t0618900-01	Rice	cytosol, extracellular	49.44	67.17
GSMUA_Achr4P08470_001	Banana	extracellular	61.52	66.91
CDX67513	Canola	extracellular	64.65	64.65
Bra028511.1-P	Field mustard	extracellular	64.65	64.65
AT5G41870.1	Thale cress	extracellular	64.88	64.59
Os02t0256100-01	Rice	extracellular	63.98	64.56
CDY13383	Canola	extracellular	63.76	64.04
EES20030	Sorghum	extracellular	62.86	64.01
TraesCS3B01G253000.1	Wheat	extracellular	63.98	63.56
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	57.49	63.3
TraesCS3D01G230000.1	Wheat	extracellular	63.31	62.89
EES01085	Sorghum	extracellular	62.64	62.64
Os05t0587000-01	Rice	extracellular	62.64	62.5
EES04867	Sorghum	extracellular, plasma membrane	61.52	61.38
Zm00001d009717_P001	Maize	extracellular	60.63	60.76
Zm00001d053395_P001	Maize	extracellular	60.4	59.87
Zm00001d011369_P001	Maize	extracellular	57.94	58.2
HORVU3Hr1G054810.4	Barley	extracellular	63.09	52.13
PGSC0003DMT400018848	Potato	extracellular	46.76	45.73
PGSC0003DMT400081328	Potato	extracellular	46.53	45.32
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	48.77	44.86
PGSC0003DMT400032104	Potato	extracellular	46.31	42.86
PGSC0003DMT400055769	Potato	extracellular	45.41	42.56
PGSC0003DMT400000538	Potato	extracellular	44.97	42.32
PGSC0003DMT400024595	Potato	cytosol	44.74	41.93
PGSC0003DMT400036866	Potato	extracellular, golgi	45.41	41.68
PGSC0003DMT400007594	Potato	extracellular	45.86	41.41
PGSC0003DMT400094734	Potato	cytosol	8.5	36.19
PGSC0003DMT400041391	Potato	cytosol	11.63	31.33
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	21.92	20.59
PGSC0003DMT400065330	Potato	nucleus	7.38	16.1

Protein Annotations

EntrezGene:102591521	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:M1AW19	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400012156	PGSC:PGSC0003DMG400012156	EnsemblPlants:PGSC0003DMT400031687
PANTHER:PTHR31339	PANTHER:PTHR31339:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295CAEC	RefSeq:XP_006343870.1	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400012156]

Coordinates

chr8:-:55774384..55780435

Molecular Weight (calculated)

48469.1 Da

IEP (calculated)

7.796

GRAVY (calculated)

-0.015

Length

447 amino acids

Sequence
(BLAST)

001: MNRWVGSIFL CIISTLLLMS WSVVAEGETC SGIVPMQYRN DKISILDFGG VGDGRTLNTK AFKEAIFRIQ HLKRKGGTLL YIPAGVYLTG PFDLTSRMTL
101: YLASGAVIKA TQDPSQWPLV DPLPSYGRGR ERPGARYISL LHGDGLHDVI ITGENGTIDG QGDVWWNMWR QRTLQFTRPH LVELMNSRGI LISNVIFKNS
201: PFWNIHPVYC SNVVIRYVTI LAPADSPNTD GIDPDSSSNV CIEDSYISVG DDLVAVKSGW DQYGIAYGRP SHGITIRRIT GSSPFAGIAV GSETSGGVVD
301: VLAEHISLFN MGVGIHIKTN IGRGGMIRNI TVSNVYMENA RTGIKIAGDV GDHPNENFNP NALPVVKGIK IKDVWGEKVL QAGLIHGLKN SPFSGICLSN
401: INLHGNPGSQ NSIWKCSDVS GAAIQVSPFP CAELTSSQQT GACSTYF

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.