Factsheet for Os01t0618900-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01085	Sorghum	extracellular	89.67	66.0
TraesCS3B01G253000.1	Wheat	extracellular	88.45	64.67
TraesCS3D01G230000.1	Wheat	extracellular	87.54	64.0
KRH73576	Soybean	extracellular	51.67	61.59
Zm00001d011369_P001	Maize	extracellular	82.98	61.35
Os05t0587000-01	Rice	extracellular	82.98	60.94
GSMUA_Achr4P08470_001	Banana	extracellular	75.38	60.34
HORVU3Hr1G054810.4	Barley	extracellular	87.84	53.42
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	64.74	52.46
KRH14547	Soybean	extracellular	69.0	50.9
Os02t0256100-01	Rice	extracellular	66.87	49.66
KRH45957	Soybean	extracellular	66.87	49.66
KRG99037	Soybean	nucleus	66.57	49.55
PGSC0003DMT400031687	Potato	extracellular	67.17	49.44
VIT_02s0025g01330.t01	Wine grape	extracellular	67.17	49.44
AT4G23820.1	Thale cress	extracellular, vacuole	65.96	48.87
CDY47619	Canola	extracellular, vacuole	65.65	48.65
CDY03516	Canola	extracellular, vacuole	65.35	48.42
Bra013734.1-P	Field mustard	extracellular, vacuole	65.35	48.42
Solyc08g082170.2.1	Tomato	nucleus	67.48	47.54
Bra019264.1-P	Field mustard	extracellular, vacuole	63.83	46.56
CDY10970	Canola	extracellular, vacuole	63.83	46.56
Bra028511.1-P	Field mustard	extracellular	63.22	46.53
CDX67513	Canola	extracellular	63.22	46.53
CDX94222	Canola	extracellular	63.53	46.34
CDY13383	Canola	extracellular	62.61	46.29
AT5G41870.1	Thale cress	extracellular	62.92	46.1
Os07t0245200-01	Rice	plasma membrane	56.53	41.7
Os02t0781000-01	Rice	extracellular	34.65	40.0
Os03t0833800-01	Rice	extracellular	56.23	38.87
Os12t0554800-01	Rice	cytosol, extracellular	46.81	36.32
Os11t0658800-01	Rice	extracellular	49.54	36.3
Os03t0124900-01	Rice	extracellular	48.63	34.93
Os08t0107300-00	Rice	extracellular, mitochondrion	50.76	34.65
Os06t0106800-01	Rice	extracellular	49.85	33.81
Os09t0439400-01	Rice	plastid	44.68	27.95
Os09t0487600-01	Rice	extracellular	21.58	15.54

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0P0V5A9	ProteinID:BAS73195.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	EnsemblPlantsGene:Os01g0618900	EnsemblPlants:Os01t0618900-01	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF16
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0000DD8C06
SEG:seg	:	:	:	:	:

Description

Similar to Polygalacturonase. (Os01t0618900-01);Similar to polygalacturonase. (Os01t0618900-02)

Coordinates

chr1:+:24630323..24632326

Molecular Weight (calculated)

35290.5 Da

IEP (calculated)

5.796

GRAVY (calculated)

-0.136

Length

329 amino acids

Sequence
(BLAST)

001: WPLIEPLPSY GRGRELPGGR YMSLIHGNGL QDVVITGDNG TIDGQGSAWW DMWKKGTLPF TRPHLLELMN SSDVVVSNVV FQDSPFWNIH PVYCSNVVIR
101: NVTVLAPHDS PNTDGIDPDS SSNVCIEDCY ISTGDDLIAI KSGWDEYGMA YGRPSSHITI RRITGSSPFA GFAVGSETSG GVEHVLAEHL NFFSSGFGIH
201: IKTNTGRGGF IRNVTVSDVT LDSVRYGLRI AGDVGGHPDD RYDRNALPVV DGLTIKNVQG QNIREAGSIK GIATSAFSRI CLSNVKLNGG AAVRPWKCEA
301: VSGAALDVQP SPCTELTSTS GMSFCTNSL

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.