Factsheet for Zm00001d011369_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 16602704
extracellular: 22501030

msms PMID: 22501030 doi

C Liao, R Liu, F Zhang, C Li, X Li

Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.

msms PMID: 16602704 doi

S Alvarez, JQ Goodger, EL Marsh, S Chen, VS Asirvatham, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, Missouri 63132, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01085	Sorghum	extracellular	88.54	88.14
Os01t0618900-01	Rice	cytosol, extracellular	61.35	82.98
TraesCS3B01G253000.1	Wheat	extracellular	81.12	80.22
TraesCS3D01G230000.1	Wheat	extracellular	80.45	79.56
Zm00001d009717_P001	Maize	extracellular	71.46	71.3
GSMUA_Achr4P08470_001	Banana	extracellular	62.92	68.13
HORVU3Hr1G054810.4	Barley	extracellular	78.43	64.51
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	58.2	63.79
KRH45957	Soybean	extracellular	58.65	58.92
VIT_02s0025g01330.t01	Wine grape	extracellular	58.65	58.39
KRG99037	Soybean	nucleus	57.98	58.37
KRH14547	Soybean	extracellular	58.43	58.3
PGSC0003DMT400031687	Potato	extracellular	58.2	57.94
KRH73576	Soybean	extracellular	35.28	56.88
Zm00001d053395_P001	Maize	extracellular	57.53	56.76
CDY47619	Canola	extracellular, vacuole	55.96	56.08
AT4G23820.1	Thale cress	extracellular, vacuole	55.96	56.08
Bra013734.1-P	Field mustard	extracellular, vacuole	55.73	55.86
Solyc08g082170.2.1	Tomato	nucleus	58.43	55.67
CDY03516	Canola	extracellular, vacuole	55.51	55.63
CDX67513	Canola	extracellular	54.38	54.14
Bra028511.1-P	Field mustard	extracellular	54.38	54.14
CDY13383	Canola	extracellular	53.71	53.71
AT5G41870.1	Thale cress	extracellular	54.16	53.67
CDX94222	Canola	extracellular	54.16	53.44
CDY10970	Canola	extracellular, vacuole	54.16	53.44
Bra019264.1-P	Field mustard	extracellular, vacuole	53.93	53.22
Zm00001d023813_P001	Maize	extracellular, vacuole	45.84	44.25
Zm00001d021964_P001	Maize	cytosol	16.4	43.45
Zm00001d027441_P001	Maize	plasma membrane	44.49	42.76
Zm00001d018548_P001	Maize	cytosol	21.8	41.81
Zm00001d034990_P001	Maize	plasma membrane	46.07	41.58
Zm00001d019282_P001	Maize	mitochondrion	46.97	41.14
Zm00001d048696_P001	Maize	extracellular	45.17	40.69
Zm00001d035899_P001	Maize	extracellular	43.15	39.51
Zm00001d052103_P001	Maize	plasma membrane	43.82	39.39
Zm00001d034727_P003	Maize	plastid	45.17	39.18
Zm00001d010681_P001	Maize	cytosol	24.72	38.87
Zm00001d020615_P001	Maize	plastid	40.22	34.69
Zm00001d020931_P001	Maize	extracellular	21.57	20.65

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6FZH5	ProteinID:AQK96690.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF16	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00084354D4
EnsemblPlantsGene:Zm00001d011369	EnsemblPlants:Zm00001d011369_P001	EnsemblPlants:Zm00001d011369_T001	SEG:seg	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr8:+:148782535..148785302

Molecular Weight (calculated)

47314.1 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.022

Length

445 amino acids

Sequence
(BLAST)

001: MARRCPCRLL LAVAAAAVLV AAAAQAQETC SGTVPAPPRR GARVSVASFG GAGDGRTLNT AAFARAVASI ERRAAPGGAE LYVPPGVWLT GPFNLTSRMT
101: LFLARGAVIR ATQDTSSWPL IEPLPSYGRG RELPGGRYTS LIHGNGLQDV VITGENGTID GQGSAWWDMW KNRTLLYTRP HLLELMSSSD IIVSNVVFQD
201: SPFWNIHPVY CRYRCTNVLR SLDIKAGAVV RNFADSSSNI CIEDCYISTG DDSIAIKSGW DEYGIAYGRA SSGITVRRIT GSSPFAGFAV GSETSGGVEN
301: VLAEHLNFFN SGFGIHVKTN TGRGGFIRNI TVSDVTLDNV RYGLRIVGDV GNHPDDSYNR SALPIVDALT VKNVQGQNVR EAGLIKGIPN SAFSRICLSN
401: VKFTGGAPVR PWKCEAVSGG ALDVQPSPCT ELTSTSGTSF CTNSL

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.