Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29050 | Sorghum | extracellular | 82.19 | 90.02 |
| Os11t0658800-01 | Rice | extracellular | 69.84 | 76.84 |
| TraesCS4D01G146700.1 | Wheat | extracellular, golgi, vacuole | 70.85 | 76.59 |
| TraesCS4B01G144700.2 | Wheat | extracellular, golgi, vacuole | 70.65 | 76.37 |
| TraesCS4A01G168800.1 | Wheat | extracellular, golgi, vacuole | 70.24 | 75.93 |
| Zm00001d023813_P001 | Maize | extracellular, vacuole | 65.99 | 70.72 |
| GSMUA_Achr5P00100_001 | Banana | cytosol, extracellular, plastid | 56.68 | 66.35 |
| GSMUA_Achr11P... | Banana | extracellular, vacuole | 52.02 | 57.75 |
| KRH37050 | Soybean | extracellular, vacuole | 52.83 | 57.74 |
| KRH12027 | Soybean | extracellular, vacuole | 53.24 | 55.84 |
| VIT_05s0077g01760.t01 | Wine grape | extracellular, vacuole | 51.21 | 55.6 |
| CDY33922 | Canola | extracellular | 49.39 | 54.95 |
| VIT_07s0005g00890.t01 | Wine grape | extracellular | 52.83 | 54.72 |
| GSMUA_Achr11P... | Banana | extracellular | 60.32 | 54.28 |
| KRH69264 | Soybean | extracellular | 49.8 | 54.07 |
| Bra037429.1-P | Field mustard | extracellular | 48.58 | 54.05 |
| PGSC0003DMT400018848 | Potato | extracellular | 50.0 | 54.05 |
| KRH31843 | Soybean | extracellular | 49.8 | 53.95 |
| KRH02302 | Soybean | extracellular | 48.99 | 53.9 |
| KRH50791 | Soybean | extracellular | 48.79 | 53.67 |
| AT3G16850.1 | Thale cress | vacuole | 49.39 | 53.63 |
| Solyc06g009790.2.1 | Tomato | extracellular | 49.39 | 53.39 |
| CDY08036 | Canola | cytosol, nucleus, vacuole | 40.28 | 52.79 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 40.49 | 52.63 |
| PGSC0003DMT400081328 | Potato | extracellular | 48.58 | 52.29 |
| AT3G06770.5 | Thale cress | extracellular | 47.17 | 52.13 |
| CDX92101 | Canola | extracellular, golgi | 47.98 | 52.09 |
| Bra020656.1-P | Field mustard | extracellular, plasma membrane | 49.39 | 51.91 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 47.17 | 51.89 |
| Bra022182.1-P | Field mustard | extracellular, golgi | 47.57 | 51.88 |
| CDX95899 | Canola | extracellular | 47.37 | 51.66 |
| CDY54633 | Canola | extracellular | 46.76 | 51.56 |
| CDY56436 | Canola | extracellular, vacuole | 49.19 | 51.27 |
| KRG96478 | Soybean | endoplasmic reticulum, extracellular | 49.8 | 51.04 |
| Bra001642.1-P | Field mustard | vacuole | 46.56 | 51.0 |
| CDX82390 | Canola | extracellular | 46.15 | 50.78 |
| Bra001215.1-P | Field mustard | extracellular | 45.95 | 50.56 |
| Solyc09g075460.2.1 | Tomato | extracellular | 48.79 | 50.21 |
| CDY05643 | Canola | extracellular, plasma membrane, plastid | 48.38 | 50.0 |
| KRH68221 | Soybean | extracellular | 50.2 | 49.9 |
| VIT_05s0077g01740.t01 | Wine grape | nucleus | 23.68 | 49.58 |
| CDX86247 | Canola | plasma membrane, plastid | 48.99 | 48.3 |
| Zm00001d034727_P003 | Maize | plastid | 47.77 | 46.0 |
| Zm00001d011369_P001 | Maize | extracellular | 40.69 | 45.17 |
| Zm00001d019282_P001 | Maize | mitochondrion | 46.36 | 45.08 |
| Zm00001d053395_P001 | Maize | extracellular | 40.69 | 44.57 |
| Zm00001d009717_P001 | Maize | extracellular | 39.07 | 43.27 |
| GSMUA_Achr11P... | Banana | cytosol | 57.49 | 42.9 |
| Zm00001d034990_P001 | Maize | plasma membrane | 41.09 | 41.18 |
| Zm00001d018548_P001 | Maize | cytosol | 19.23 | 40.95 |
| Zm00001d027441_P001 | Maize | plasma membrane | 37.65 | 40.17 |
| Zm00001d010681_P001 | Maize | cytosol | 22.27 | 38.87 |
| Zm00001d035899_P001 | Maize | extracellular | 38.06 | 38.68 |
| Zm00001d052103_P001 | Maize | plasma membrane | 37.85 | 37.78 |
| Zm00001d021964_P001 | Maize | cytosol | 12.75 | 37.5 |
| Zm00001d020615_P001 | Maize | plastid | 35.22 | 33.72 |
| Zm00001d020931_P001 | Maize | extracellular | 20.85 | 22.15 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | UniProt:A0A1D6PNR8 | ProteinID:AQK48488.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31339 |
| PANTHER:PTHR31339:SF11 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 |
| TMHMM:TMhelix | UniParc:UPI00084266B7 | EnsemblPlantsGene:Zm00001d048696 | EnsemblPlants:Zm00001d048696_P001 | EnsemblPlants:Zm00001d048696_T001 | SEG:seg |
Description
Pectin lyase-like superfamily protein
Coordinates
chr4:+:3440984..3444303
Molecular Weight (calculated)
52448.0 Da
IEP (calculated)
5.199
GRAVY (calculated)
0.056
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGGRALIAT AGDLVVTDGG ATPTPMRLRC GFLVPVVLAL VLAAALGPAT APAPARAQLR RDHQAPPGPR PHSVTITEFG AVGDGRTLNT VPFQNAVFYV
101: RSFADKGGAQ LYVPRGRWLT GSFNLTSHLT LYLEEGAVIV GAKDSSQWLI VEPLPSYGQG LDLPGPRHQS LISGYNLTDV VITGNNGVID GQGLVWWQWL
201: RSHELNHSRP NLLEFLYSED IVISNLTFLN SPAWSIHPVY CRCSAINLAL CVHNVTIKTS LDAPLTDGIV PDSCSNLCIE DSTISVSHEA ISLKSGWDRY
301: GISFGRPTSD IRISRVDLLS SSGAALAFGS EMSGGISDIH VNHLRIHDSS KGISFKTSPG RGGYIEDVVI SEVQMENVHV GIEFTGNCST HPDDSFDPSD
401: LPAIDHVTMK NMAGTNISVA GVLSGIEGAP FTAICLSNLN FSMAAGSGPS SWSCSDVSGY SEAVFPEPCT ELRDPSSSSS VCYSLASYSA IETA
101: RSFADKGGAQ LYVPRGRWLT GSFNLTSHLT LYLEEGAVIV GAKDSSQWLI VEPLPSYGQG LDLPGPRHQS LISGYNLTDV VITGNNGVID GQGLVWWQWL
201: RSHELNHSRP NLLEFLYSED IVISNLTFLN SPAWSIHPVY CRCSAINLAL CVHNVTIKTS LDAPLTDGIV PDSCSNLCIE DSTISVSHEA ISLKSGWDRY
301: GISFGRPTSD IRISRVDLLS SSGAALAFGS EMSGGISDIH VNHLRIHDSS KGISFKTSPG RGGYIEDVVI SEVQMENVHV GIEFTGNCST HPDDSFDPSD
401: LPAIDHVTMK NMAGTNISVA GVLSGIEGAP FTAICLSNLN FSMAAGSGPS SWSCSDVSGY SEAVFPEPCT ELRDPSSSSS VCYSLASYSA IETA
001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.