Factsheet for PGSC0003DMT400081328

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075460.2.1	Tomato	extracellular	97.39	93.12
PGSC0003DMT400018848	Potato	extracellular	78.65	78.99
VIT_07s0005g00890.t01	Wine grape	extracellular	67.1	64.57
KRH69264	Soybean	extracellular	61.22	61.76
KRH31843	Soybean	extracellular	59.7	60.09
CDY33922	Canola	extracellular	57.95	59.91
KRG96478	Soybean	endoplasmic reticulum, extracellular	62.53	59.54
Bra037429.1-P	Field mustard	extracellular	57.3	59.23
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	54.03	58.77
AT5G49215.1	Thale cress	extracellular, vacuole	57.3	58.57
Os12t0554800-01	Rice	cytosol, extracellular	54.03	58.49
CDX92101	Canola	extracellular, golgi	57.3	57.8
Bra022182.1-P	Field mustard	extracellular, golgi	56.86	57.62
AT3G16850.1	Thale cress	vacuole	57.08	57.58
CDY08036	Canola	cytosol, nucleus, vacuole	47.28	57.56
AT3G06770.5	Thale cress	extracellular	55.77	57.27
CDX82390	Canola	extracellular	55.77	57.02
Bra001642.1-P	Field mustard	vacuole	55.99	56.98
CDX74085	Canola	cytoskeleton, cytosol, vacuole	47.06	56.84
KRH68221	Soybean	extracellular	61.44	56.74
CDX95899	Canola	extracellular	55.99	56.73
CDY54633	Canola	extracellular	55.34	56.7
Bra020656.1-P	Field mustard	extracellular, plasma membrane	57.95	56.6
TraesCS5B01G097100.2	Wheat	extracellular	55.12	56.35
TraesCS5D01G102900.1	Wheat	unclear	54.9	56.12
CDY56436	Canola	extracellular, vacuole	57.73	55.91
CDY05643	Canola	extracellular, plasma membrane, plastid	57.3	55.02
Bra001215.1-P	Field mustard	extracellular	53.81	55.01
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	54.47	54.7
KXG29050	Sorghum	extracellular	53.59	54.55
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	54.03	54.27
Os11t0658800-01	Rice	extracellular	52.94	54.12
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	53.59	53.83
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	54.9	53.16
Zm00001d023813_P001	Maize	extracellular, vacuole	53.16	52.93
CDX86247	Canola	plasma membrane, plastid	57.73	52.89
GSMUA_Achr11P...	Banana	extracellular, vacuole	49.24	50.79
HORVU5Hr1G023800.7	Barley	plastid	55.99	50.1
Zm00001d048696_P001	Maize	extracellular	52.29	48.58
PGSC0003DMT400031687	Potato	extracellular	45.32	46.53
GSMUA_Achr11P...	Banana	extracellular	54.47	45.54
PGSC0003DMT400000538	Potato	extracellular	45.75	44.21
PGSC0003DMT400055769	Potato	extracellular	44.88	43.19
PGSC0003DMT400032104	Potato	extracellular	45.1	42.86
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	43.57	41.15
PGSC0003DMT400024595	Potato	cytosol	42.7	41.09
PGSC0003DMT400036866	Potato	extracellular, golgi	40.09	37.78
PGSC0003DMT400094734	Potato	cytosol	8.5	37.14
GSMUA_Achr11P...	Banana	cytosol	52.72	36.56
PGSC0003DMT400007594	Potato	extracellular	38.56	35.76
PGSC0003DMT400041391	Potato	cytosol	9.8	27.11
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	22.44	21.64
PGSC0003DMT400065330	Potato	nucleus	8.71	19.51

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:ABB55373	ProteinID:ABB55373.1	EMBL:DQ252496	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M1D4K8	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400031797	PGSC:PGSC0003DMG400031797
EnsemblPlants:PGSC0003DMT400081328	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00029520EF	SEG:seg	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400031797]

Coordinates

chr9:+:52959136..52963192

Molecular Weight (calculated)

49776.9 Da

IEP (calculated)

5.386

GRAVY (calculated)

-0.013

Length

459 amino acids

Sequence
(BLAST)

001: MSEKNTIMKR LAVLLLLLVF SHCIVQSEAQ FEGECKFNKH LKPRPHSVSV LDFGAVGDGK TINTVAFQNA IFYLKSFADK GGAQLYVPAG KWLTRSINLT
101: SHLTLFLEKD AVILASEDFD HWDVVEALPS YGRGIEAQYG RYRSLISGNN LTDVVITGNN GTIDGQGSIW WEKFNSHSLN YTRPHLVEFV SSRNVVISNL
201: TLLNAPGWNI RPAYCSNVVI QNLTVYTPQD SPFTNGIVPD SSEHVCIENS NISMGYDAIV LKSGWDEYGI SYGKPTSNVH IRRVRLQSAA GAGVALGSEM
301: SGGISDVLVE LSSLHDSLFG IELKTARGRG GFIKDILISN VVMDNLQVGI KATGYSDTHP DEKYDPSSLP TVSGITFEDI IGTNISIAGN FTGLSESPFT
401: SICLSNISIS ISSDPSTPWL CSNISGSSKN VSPEPCPELQ GSFSSCFALP NPYTEVAVL

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.