Factsheet for Zm00001d053395_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04867	Sorghum	extracellular, plasma membrane	90.24	90.85
Os02t0256100-01	Rice	extracellular	80.71	82.17
KRG99037	Soybean	nucleus	62.53	63.8
KRH45957	Soybean	extracellular	61.86	62.98
VIT_02s0025g01330.t01	Wine grape	extracellular	61.2	61.74
Bra013734.1-P	Field mustard	extracellular, vacuole	60.75	61.71
CDY03516	Canola	extracellular, vacuole	60.75	61.71
CDY47619	Canola	extracellular, vacuole	60.53	61.49
CDX94222	Canola	extracellular	61.2	61.2
CDY10970	Canola	extracellular, vacuole	60.75	60.75
Bra019264.1-P	Field mustard	extracellular, vacuole	60.75	60.75
AT4G23820.1	Thale cress	extracellular, vacuole	59.65	60.59
PGSC0003DMT400031687	Potato	extracellular	59.87	60.4
KRH14547	Soybean	extracellular	59.2	59.87
Zm00001d009717_P001	Maize	extracellular	58.76	59.42
KRH73576	Soybean	extracellular	36.14	59.06
AT5G41870.1	Thale cress	extracellular	58.54	58.8
Solyc08g082170.2.1	Tomato	nucleus	60.53	58.46
CDX67513	Canola	extracellular	57.43	57.94
Bra028511.1-P	Field mustard	extracellular	57.43	57.94
Zm00001d011369_P001	Maize	extracellular	56.76	57.53
CDY13383	Canola	extracellular	56.32	57.08
Zm00001d018548_P001	Maize	cytosol	22.17	43.1
Zm00001d034990_P001	Maize	plasma membrane	47.01	43.0
Zm00001d023813_P001	Maize	extracellular, vacuole	43.68	42.73
Zm00001d035899_P001	Maize	extracellular	44.79	41.56
Zm00001d027441_P001	Maize	plasma membrane	42.13	41.04
Zm00001d048696_P001	Maize	extracellular	44.57	40.69
Zm00001d010681_P001	Maize	cytosol	25.5	40.64
Zm00001d052103_P001	Maize	plasma membrane	44.35	40.4
Zm00001d019282_P001	Maize	mitochondrion	45.23	40.16
Zm00001d020615_P001	Maize	plastid	44.12	38.57
Zm00001d034727_P003	Maize	plastid	43.68	38.4
Zm00001d021964_P001	Maize	cytosol	14.19	38.1
Zm00001d020931_P001	Maize	extracellular	23.28	22.58

Protein Annotations

EntrezGene:100384246	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:AQK59368.1	EMBL:BT066439	UniProt:C0PDS0
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000195C935	EnsemblPlantsGene:Zm00001d053395	EnsemblPlants:Zm00001d053395_P001	EnsemblPlants:Zm00001d053395_T001	SEG:seg

Description

Pectin lyase-like superfamily protein

Coordinates

chr4:-:229171718..229174509

Molecular Weight (calculated)

48176.3 Da

IEP (calculated)

8.559

GRAVY (calculated)

-0.051

Length

451 amino acids

Sequence
(BLAST)

001: MAAATSRGPA SVAICALAVL HAMAALCDSA TAAAATCAGL APAKHRPEVI SIADFGGVGD GRTLNTWAFR KAVYRIQHQR RRGGTTLHVP AGTWLAGSFN
101: LTSHMTLFLA RGAVLKATQD TRGWPLVEPL PSYGRGRELP GPRYASFIHG DGLRDVVITG DRGVIDGQGE VWWNMWRRRT LEHTRPNLVE FMHSTGIHIS
201: NIVLKNSPFW NIHPVYCDNV VVTNMMILAP RDSPNTDGVD PDSSSNVCIE DSYISTGDDL VAIKSGWDEY GIAYGRPSAG VTVRRVRGSS PFSGIAIGSE
301: ASGGVRDVLV EDCAIFDSGY GIHIKTNVGR GGYIRNVTVD GVRLTGVRSG VRIAGDVGDH PDAHFSQLAV PTVDAVRISN VWGVNVQQPG SLEGIRASPF
401: TRICLSNVKL FGWRSDAAWK CRDVRGAALG VQPSPCAELA TSFASARSSC S

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.