Factsheet for Os06t0106800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035899_P001	Maize	extracellular	84.95	84.77
EER89047	Sorghum	extracellular, vacuole	86.19	84.44
GSMUA_Achr4P05580_001	Banana	cytosol	49.07	76.28
TraesCS7D01G016300.2	Wheat	extracellular	76.91	76.28
CDY10898	Canola	cytosol	7.84	74.51
CDY69951	Canola	cytosol	19.18	73.81
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	77.53	72.17
TraesCS7A01G019900.1	Wheat	cytosol	39.38	71.27
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	29.48	71.14
TraesCSU01G066000.1	Wheat	golgi, unclear	76.91	70.91
TraesCS7A01G019500.1	Wheat	cytosol	38.76	70.15
VIT_02s0025g00260.t01	Wine grape	extracellular	63.71	64.38
PGSC0003DMT400055769	Potato	extracellular	63.3	64.36
KRH59960	Soybean	nucleus	65.15	64.23
CDY70893	Canola	cytosol	47.01	63.69
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	62.47	63.26
Solyc05g049980.2.1	Tomato	extracellular	63.3	63.17
CDY65355	Canola	extracellular	61.44	63.14
KRH41230	Soybean	nucleus	64.12	62.96
Solyc01g094970.2.1	Tomato	extracellular	52.78	62.9
TraesCS7A01G019700.1	Wheat	cytosol	15.88	62.6
KRH48075	Soybean	extracellular	62.06	62.45
Bra007609.1-P	Field mustard	extracellular	60.41	62.34
CDY48913	Canola	extracellular	60.41	62.21
CDY69255	Canola	cytosol	47.84	61.7
KRH00832	Soybean	nucleus	61.44	61.57
KRH40394	Soybean	extracellular, nucleus	61.24	61.36
PGSC0003DMT400032104	Potato	extracellular	61.03	61.28
Solyc08g081480.2.1	Tomato	extracellular	61.03	61.28
KRH06594	Soybean	mitochondrion	61.86	61.1
PGSC0003DMT400000538	Potato	extracellular	59.38	60.63
KRH48076	Soybean	extracellular	58.76	60.13
PGSC0003DMT400094734	Potato	cytosol	12.99	60.0
Os03t0124900-01	Rice	extracellular	55.88	59.17
AT4G23500.1	Thale cress	extracellular, plasma membrane	60.0	58.79
Bra013697.1-P	Field mustard	extracellular, plasma membrane	59.38	58.42
Bra019299.1-P	Field mustard	extracellular, plasma membrane	59.18	58.22
CDY44105	Canola	cytosol, nucleus, plasma membrane	54.02	57.96
AT3G61490.4	Thale cress	cytosol, plastid	61.44	50.59
Os01t0618900-01	Rice	cytosol, extracellular	33.81	49.85
Os07t0245200-01	Rice	plasma membrane	45.57	49.55
Os03t0833800-01	Rice	extracellular	46.6	47.48
Os12t0554800-01	Rice	cytosol, extracellular	39.79	45.52
Os05t0587000-01	Rice	extracellular	41.44	44.87
Os02t0256100-01	Rice	extracellular	40.82	44.7
Os11t0658800-01	Rice	extracellular	40.82	44.1
Os08t0107300-00	Rice	extracellular, mitochondrion	43.3	43.57
CDY10899	Canola	cytosol	8.45	42.71
Os02t0781000-01	Rice	extracellular	24.54	41.75
Os09t0439400-01	Rice	plastid	40.21	37.07
Solyc06g030520.1.1	Tomato	cytosol	7.01	29.82
KRH33610	Soybean	plastid	10.1	27.22
PGSC0003DMT400065330	Potato	nucleus	10.72	25.37
Os09t0487600-01	Rice	extracellular	22.27	23.63

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4339868	MapMan:50.3.2	ProteinID:BAD67712.1	ProteinID:BAS95755.1	ProteinID:EAZ35554.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os06g0106800	EnsemblPlants:Os06t0106800-01	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q5VS63
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000457C5E	RefSeq:XP_015643779.1	SEG:seg

Description

Similar to glycoside hydrolase, family 28. (Os06t0106800-01);Similar to glycoside hydrolase, family 28. (Os06t0106800-02)

Coordinates

chr6:-:439064..441551

Molecular Weight (calculated)

51429.1 Da

IEP (calculated)

6.383

GRAVY (calculated)

0.017

Length

485 amino acids

Sequence
(BLAST)

001: MALQTQPVPN ASPLHVLRSV CVLLLAASAT VAARRHGPAA PIAGQSMYLA PSCRAHTASL TDFGGVGDGT TSNTAAFKSA VDHLSQYSGE GGGGAMLYVP
101: AGKWLTGPFN LTSHFTLFLH SDAVILGSQD MGEWPIIDPL PSYGRGRDKA GGRYASLIGG SNLTDVVITG ANGTIDGQGA MWWSKFHSNK LKYTRGYLIE
201: VMHSDTVVIS NVTLVNSPAW NIHPVYSSNI VVQGVTILAP THSPNTDGIN PDSCSHVRIE DCYIVSGDDC VAIKSGWDEY GIAYGMPSQH IVVRRLTCVS
301: PTSAVIALGS EMSGGISDVR AEDITAVNSE SAVRIKTAVG RGAYVRDVFV RGMSLDTMKW VFWMTGNYKS HPDDGYDPNA IPVVDNISYQ DVVATGVYKE
401: AARLEGIQGA PFRGICIANV TATLSKSRKY PWTCTDIEGV STGVTPAPCQ PLQGAHDGAC PFPTDTLPID QLVMQQCAYS VPASI

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.