Factsheet for GSMUA_Achr7P24560_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69951	Canola	cytosol	23.86	33.33
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	59.66	25.86
GSMUA_Achr4P08470_001	Banana	extracellular	60.23	25.79
GSMUA_Achr8P19900_001	Banana	cytosol	54.55	23.13
GSMUA_Achr10P...	Banana	cytosol	53.98	23.06
GSMUA_Achr6P14280_001	Banana	cytosol	52.27	22.89
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	55.11	21.95
Zm00001d018548_P001	Maize	cytosol	28.41	21.55
Zm00001d010681_P001	Maize	cytosol	32.95	20.49
GSMUA_AchrUn_...	Banana	extracellular	45.45	20.36
GSMUA_Achr8P06180_001	Banana	extracellular	44.89	20.1
Solyc01g094970.2.1	Tomato	extracellular	46.02	19.9
GSMUA_Achr4P05580_001	Banana	cytosol	33.52	18.91
Zm00001d027441_P001	Maize	plasma membrane	48.3	18.36
PGSC0003DMT400055769	Potato	extracellular	48.86	18.03
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	43.18	18.01
TraesCS5A01G513600.1	Wheat	extracellular	46.02	17.96
EER95599	Sorghum	extracellular	47.16	17.93
Os03t0124900-01	Rice	extracellular	46.59	17.9
Solyc05g049980.2.1	Tomato	extracellular	49.43	17.9
CDY65355	Canola	extracellular	47.73	17.8
Bra007609.1-P	Field mustard	extracellular	47.16	17.66
CDY48913	Canola	extracellular	47.16	17.62
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	47.16	17.33
GSMUA_Achr11P...	Banana	extracellular	46.59	17.23
KRH00832	Soybean	nucleus	47.16	17.15
KRH40394	Soybean	extracellular, nucleus	47.16	17.15
TraesCS4B01G344700.1	Wheat	extracellular	46.59	16.87
KRH48076	Soybean	extracellular	44.89	16.67
PGSC0003DMT400000538	Potato	extracellular	44.89	16.63
KRH48075	Soybean	extracellular	45.45	16.6
Solyc08g081480.2.1	Tomato	extracellular	45.45	16.56
KRH59960	Soybean	nucleus	46.02	16.46
GSMUA_Achr11P...	Banana	cytosol	28.41	16.39
PGSC0003DMT400032104	Potato	extracellular	44.89	16.36
GSMUA_Achr11P...	Banana	cytosol	28.98	16.35
KRH06594	Soybean	mitochondrion	45.45	16.29
GSMUA_Achr3P10280_001	Banana	mitochondrion	44.32	16.28
VIT_02s0025g00260.t01	Wine grape	extracellular	44.32	16.25
KRH41230	Soybean	nucleus	45.45	16.19
GSMUA_Achr9P18190_001	Banana	mitochondrion	44.32	15.89
GSMUA_Achr11P...	Banana	mitochondrion	44.32	15.89
GSMUA_Achr5P22120_001	Banana	extracellular	44.32	15.85
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	44.89	15.83
Bra019299.1-P	Field mustard	extracellular, plasma membrane	42.61	15.21
Bra013697.1-P	Field mustard	extracellular, plasma membrane	42.61	15.21
AT4G23500.1	Thale cress	extracellular, plasma membrane	42.61	15.15
GSMUA_Achr11P...	Banana	extracellular	44.32	14.21
AT3G61490.4	Thale cress	cytosol, plastid	47.16	14.09
CDY70893	Canola	cytosol	27.84	13.69
CDY69255	Canola	cytosol	28.98	13.56
CDY44105	Canola	cytosol, nucleus, plasma membrane	34.66	13.5
GSMUA_Achr11P...	Banana	extracellular, vacuole	31.82	12.58
GSMUA_Achr11P...	Banana	cytosol	44.32	11.78
KRH33610	Soybean	plastid	9.66	9.44
GSMUA_Achr3P11090_001	Banana	extracellular	23.3	8.84
Solyc06g030520.1.1	Tomato	cytosol	2.84	4.39
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	2.84	2.49
PGSC0003DMT400065330	Potato	nucleus	2.84	2.44
PGSC0003DMT400094734	Potato	cytosol	0.0	0.0
CDY10899	Canola	cytosol	0.0	0.0
CDY10898	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr7P24560_001	EnsemblPlants:GSMUA_Achr7T24560_001	EnsemblPlantsGene:GSMUA_Achr7G24560_001	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_28	InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3
PFAM:PF00295	SUPFAM:SSF51126	UniParc:UPI000296A9E2	UniProt:M0TKE2	MapMan:50.3.2	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr7G24560_001]

Coordinates

chr7:+:26516936..26519016

Molecular Weight (calculated)

19265.6 Da

IEP (calculated)

5.175

GRAVY (calculated)

-0.095

Length

176 amino acids

Sequence
(BLAST)

001: MKRRGEVVSI TDFGGVGDGR TLNTAAFESA VSRFEQLNAP AGTGGNFIPS SDLSYRLWFW SLLPVVAILF AEKGGHPSVH SIETENIFSL QFLFKTSKRS
101: YNIMYSYHCS NVVVRNVTIL APHDSPNTDG VDPDSSSNVC IEDCYISTGE DLVAMKSGWD EYAIAYAHPS SGITIR

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.