Factsheet for GSMUA_Achr8P06180_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 3
plasma membrane 2
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	87.02	87.02
TraesCS4A01G358700.1	Wheat	extracellular	70.99	62.14
Os07t0245200-01	Rice	plasma membrane	70.48	62.11
Os03t0833800-01	Rice	extracellular	72.77	60.08
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	70.74	59.66
TraesCS5B01G513100.1	Wheat	extracellular	72.01	59.45
EER90587	Sorghum	extracellular	71.5	59.16
KRH69147	Soybean	nucleus	69.72	59.05
HORVU5Hr1G117470.3	Barley	extracellular	71.5	59.03
KRG96607	Soybean	extracellular	69.72	58.55
KRH33649	Soybean	nucleus	68.96	58.41
KRH68340	Soybean	nucleus	69.47	58.33
EER96131	Sorghum	extracellular, mitochondrion	70.23	55.31
CDY25090	Canola	extracellular, golgi	63.36	54.37
AT3G62110.1	Thale cress	vacuole	65.14	54.35
Zm00001d019282_P001	Maize	mitochondrion	70.23	54.33
Zm00001d034727_P003	Maize	plastid	70.74	54.19
Bra003485.1-P	Field mustard	extracellular, golgi	62.85	53.93
CDX67875	Canola	extracellular, golgi	62.85	53.93
TraesCS5D01G513600.1	Wheat	plastid	71.76	53.11
Bra007662.1-P	Field mustard	extracellular, plasma membrane	62.09	53.04
CDY11403	Canola	extracellular, plasma membrane	61.83	52.83
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	56.49	52.61
CDX76617	Canola	extracellular, plasma membrane	60.05	51.3
GSMUA_Achr6P14280_001	Banana	cytosol	51.65	50.5
GSMUA_Achr4P08470_001	Banana	extracellular	52.67	50.37
GSMUA_Achr11P...	Banana	cytosol	39.95	50.32
GSMUA_Achr10P...	Banana	cytosol	51.4	49.03
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	50.38	48.77
GSMUA_Achr4P05580_001	Banana	cytosol	38.68	48.72
GSMUA_Achr8P19900_001	Banana	cytosol	51.4	48.67
GSMUA_Achr11P...	Banana	extracellular, vacuole	54.71	48.31
GSMUA_Achr11P...	Banana	cytosol	36.64	47.21
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	20.1	44.89
GSMUA_Achr11P...	Banana	extracellular	52.16	43.07
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	46.06	40.95
GSMUA_Achr11P...	Banana	extracellular	54.45	38.98
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	19.59	38.31
GSMUA_Achr3P10280_001	Banana	mitochondrion	45.55	37.37
GSMUA_Achr9P18190_001	Banana	mitochondrion	45.8	36.66
GSMUA_Achr11P...	Banana	mitochondrion	45.55	36.46
GSMUA_Achr5P22120_001	Banana	extracellular	44.78	35.77
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	44.53	35.07
GSMUA_Achr11P...	Banana	cytosol	51.65	30.66
GSMUA_Achr3P11090_001	Banana	extracellular	22.65	19.18

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr8G06180_001	EnsemblPlants:GSMUA_Achr8P06180_001	EnsemblPlants:GSMUA_Achr8T06180_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0TN21	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF20
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000294D36E

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr8G06180_001]

Coordinates

chr8:-:4018185..4022048

Molecular Weight (calculated)

42619.3 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.070

Length

393 amino acids

Sequence
(BLAST)

001: MGSSTYRPHS VSGGAQLFVP AGKWLTGSFS LISHLTLSLD KDAVIIGSMD SSDWPVIDPL PSYGRGRELP GGRHQSLIHG SNLTDVIITG GNGTVDGQGC
101: VWWEWFNNHT LNYTRPHLIE LMYSKGVVIS NLTFINSPFW AIHPVYCSQV LVQNVTILAP PDSPNTDGID PDSSDNVCIE DCYISTGDDL IVIKSGWDEY
201: GISFARPSSN ISIRHIVGEA NSGAGIALGS EMSGGISNVR AEDICLFNSL YGIRIKTSPG RGGYVRHIHI SNVIMTNVKT AIGITGRYGE HPDENYDPNA
301: LPVIDMITIE DVSGTVIKHA GTLEGIKGDN FNSICLSNVH LNVTSKHPWK CSYIEGFSNL VTPELCESLR NPYQSSVCYT ANHFDCCNLV QAA

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.