Factsheet for VIT_18s0001g07980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0236g00140.t01
VIT_02s0236g00150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24400.1	VIT_02s0236g00140.t01	AT5G47100.1	14730064
AT4G24400.1	VIT_02s0236g00150.t01	AT5G47100.1	14730064

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52875	Soybean	cytosol	86.35	86.55
KRH62165	Soybean	cytosol	86.13	86.32
PGSC0003DMT400016336	Potato	cytosol	83.67	83.67
Solyc04g076810.2.1	Tomato	cytosol	83.0	83.0
KRH72505	Soybean	cytosol	81.88	82.43
AT4G24400.1	Thale cress	cytosol	79.42	79.78
CDY68878	Canola	cytosol, plastid	78.52	78.7
Bra013799.1-P	Field mustard	cytosol	73.15	78.42
CDY03449	Canola	cytosol	78.52	77.48
TraesCS3D01G203000.4	Wheat	cytosol	75.39	75.06
Os01t0536000-01	Rice	cytosol	74.72	74.89
KRG93778	Soybean	endoplasmic reticulum, plasma membrane, vacuole	48.32	74.74
TraesCS3B01G225800.1	Wheat	cytosol	74.72	74.39
TraesCS3A01G200900.1	Wheat	cytosol	74.27	73.94
Zm00001d000080_P007	Maize	cytosol	74.27	73.61
KXG32670	Sorghum	cytosol	73.83	72.69
VIT_11s0016g05420.t01	Wine grape	cytosol	71.14	71.3
Zm00001d044553_P006	Maize	cytosol, plasma membrane, plastid	69.8	62.28
VIT_06s0009g01840.t01	Wine grape	cytosol	57.94	59.0
VIT_15s0048g02740.t01	Wine grape	cytosol	53.47	57.04
VIT_10s0003g04020.t01	Wine grape	cytosol	56.82	55.82
GSMUA_Achr4P13410_001	Banana	cytosol, mitochondrion	79.42	55.21
VIT_05s0020g00830.t01	Wine grape	cytosol	41.39	47.31
VIT_11s0052g01700.t01	Wine grape	cytosol	45.41	43.47
VIT_14s0108g01230.t01	Wine grape	cytosol	32.66	28.4
VIT_08s0040g00720.t01	Wine grape	cytosol	31.77	25.96

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
EntrezGene:100250541	wikigene:100250541	MapMan:18.4.5.3	MapMan:26.6.1.1.2	Gene3D:3.30.200.20	Gene3D:3.30.310.80
ProteinID:ACQ83533	ProteinID:ACQ83533.1	EMBL:AM424632	ProteinID:CAN60137	ProteinID:CAN60137.1	ProteinID:CCB45685
ProteinID:CCB45685.1	EntrezGene:CIPK17	wikigene:CIPK17	UniProt:F6GZK6	EMBL:FJ901245	EMBL:FN595227
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010167	GO:GO:0016020	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	GO:GO:0046777	GO:GO:0048364
InterPro:IPR000719	InterPro:IPR018451	InterPro:Kinase-like_dom_sf	InterPro:NAF/FISL_domain	InterPro:NAF_dom	PFAM:PF00069
PFAM:PF03822	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50816
PANTHER:PTHR24343	PANTHER:PTHR24343:SF157	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	TIGR:TC65265	UniParc:UPI0001985474	ArrayExpress:VIT_18s0001g07980	EnsemblPlantsGene:VIT_18s0001g07980	EnsemblPlants:VIT_18s0001g07980.t01
unigene:Vvi.8565	RefSeq:XP_010664075.1	SEG:seg	:	:	:

Description

Non-specific serine/threonine protein kinase [Source:UniProtKB/TrEMBL;Acc:F6GZK6]

Coordinates

chr18:-:6443024..6452392

Molecular Weight (calculated)

50625.1 Da

IEP (calculated)

7.212

GRAVY (calculated)

-0.256

Length

447 amino acids

Sequence
(BLAST)

001: MVAVRKVGKY EVGRTIGEGT FAKVKFAQNT ETGESVAMKV LDRSTIIKHK MTDQIKREIS IMKLVRHPYV VRLHEVLASR TKIYIILEFI TGGELFDKIV
101: HHGRLSENES RSYFQQLIDG VDYCHSKGVY HRDLKPENLL LDSQGNLKIS DFGLSALPAP GVSLLKTTCG TPNYVAPEVL SHKGYDGAVA DVWSCGVILY
201: VLMAGYLPFD ELDLTTLYSK IERAEFSCPS WFPVGAKSLI HRILDPNPET RIRIEQIRSD EWFRKGYVPV RLLEYEDVNL DDVNAVFDDP EEQHANDQHG
301: NEDMGPLILN AFDLIILSQG LNLSALFERG EGPVKHQTRF VSQKPPRVVL SSMEVVAQSM GFKTHIRNYK MRVEGISANK MEHFSVMLEI FEVAPTFIMV
401: DIQKAAGDAG EYQKFYKNFC SNLEDIIWKP LNESSKSRIT KTKSKKG

Best Arabidopsis Sequence Match ( AT4G24400.1 )
(BLAST)

001: MVVRKVGKYE LGRTIGEGTF AKVKFAQNTE TGESVAMKIV DRSTIIKRKM VDQIKREISI MKLVRHPCVV RLYEVLASRT KIYIILEYIT GGELFDKIVR
101: NGRLSESEAR KYFHQLIDGV DYCHSKGVYH RDLKPENLLL DSQGNLKISD FGLSALPEQG VTILKTTCGT PNYVAPEVLS HKGYNGAVAD IWSCGVILYV
201: LMAGYLPFDE MDLPTLYSKI DKAEFSCPSY FALGAKSLIN RILDPNPETR ITIAEIRKDE WFLKDYTPVQ LIDYEHVNLD DVYAAFDDPE EQTYAQDGTR
301: DTGPLTLNAF DLIILSQGLN LATLFDRGKD SMKHQTRFIS HKPANVVLSS MEVVSQSMGF KTHIRNYKMR VEGLSANKTS HFSVILEVFK VAPSILMVDI
401: QNAAGDAEEY LKFYKTFCSK LDDIIWKPPD ASMRNRVTKA KSKRR

Arabidopsis Description

CIPK8CBL-interacting serine/threonine-protein kinase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.