Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72499 | Canola | mitochondrion | 13.38 | 35.29 |
| CDY70768 | Canola | plastid | 23.79 | 22.46 |
| Solyc11g066280.1.1 | Tomato | nucleus | 27.88 | 22.39 |
| AT4G01560.1 | Thale cress | nucleus | 27.51 | 21.57 |
| Zm00001d011121_P001 | Maize | nucleus, plasma membrane | 28.62 | 21.39 |
| PGSC0003DMT400001077 | Potato | cytosol | 27.88 | 21.13 |
| VIT_07s0031g03160.t01 | Wine grape | nucleus | 27.14 | 21.1 |
| VIT_14s0036g01520.t01 | Wine grape | nucleus | 27.14 | 21.1 |
| CDY07134 | Canola | nucleus | 26.77 | 20.63 |
| CDY58227 | Canola | nucleus | 26.77 | 20.63 |
| Bra036325.1-P | Field mustard | nucleus | 26.77 | 20.57 |
| KRH06320 | Soybean | nucleus | 27.14 | 20.11 |
| KRH47743 | Soybean | nucleus | 27.14 | 20.11 |
| Zm00001d014626_P002 | Maize | plastid | 17.84 | 16.38 |
| CDY18814 | Canola | cytosol | 12.27 | 11.79 |
| TraesCS3B01G302100.1 | Wheat | nucleus | 18.59 | 9.31 |
Protein Annotations
| EnsemblPlants:Zm00001d051801_P002 | EnsemblPlants:Zm00001d051801_T002 | EnsemblPlantsGene:Zm00001d051801 | InterPro:Brix | InterPro:IPR007109 | PANTHER:PTHR22734 |
| PANTHER:PTHR22734:SF3 | PFscan:PS50833 | ProteinID:AQK55147.1 | SEG:seg | SUPFAM:SSF52954 | UniParc:UPI0008432A2D |
| UniProt:A0A1D6Q9V5 | MapMan:35.2 | : | : | : | : |
Description
Ribosomal RNA processing Brix domain protein
Coordinates
chr4:+:170023756..170027358
Molecular Weight (calculated)
30743.1 Da
IEP (calculated)
10.023
GRAVY (calculated)
-0.299
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSRKLWNMQ RIGISPHLLL STQIEGSLML YLSWGCLMAY CTFQTIQTCS SEGHKGTISV VYNSRSFLMV NNPDLWEMRS DQFGHEPLVS YRIVEVGIEI
101: FCAYHKYGKL MNHGNPTSHK PELVLNNFTT RLGHRVGRMI QSLFPQDPNF HGRRVVTFHN QRDYILFRHH SKPRTVGGGG TGMWASLHPQ AAHLAAAWDL
201: RHEERGVRVG SQAGYGYEQA EILPVMDLRS RRTLIVSSCD GFARFVRLFL FRRRGSKVAV THPIQEVDG
101: FCAYHKYGKL MNHGNPTSHK PELVLNNFTT RLGHRVGRMI QSLFPQDPNF HGRRVVTFHN QRDYILFRHH SKPRTVGGGG TGMWASLHPQ AAHLAAAWDL
201: RHEERGVRVG SQAGYGYEQA EILPVMDLRS RRTLIVSSCD GFARFVRLFL FRRRGSKVAV THPIQEVDG
001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
Arabidopsis Description
MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.