Factsheet for Zm00001d011121_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89152	Sorghum	nucleus	95.0	94.48
TraesCS4A01G375600.1	Wheat	nucleus	79.17	80.06
TraesCS7A01G077100.1	Wheat	nucleus	79.17	80.06
TraesCS7D01G072700.1	Wheat	nucleus	78.89	79.78
Os06t0137500-02	Rice	nucleus	82.78	76.02
HORVU7Hr1G018900.26	Barley	nucleus	76.94	75.89
Solyc11g066280.1.1	Tomato	nucleus	67.78	72.84
VIT_14s0036g01520.t01	Wine grape	nucleus	70.0	72.83
GSMUA_Achr8P29700_001	Banana	nucleus	63.89	72.56
VIT_07s0031g03160.t01	Wine grape	nucleus	69.17	71.97
AT4G01560.1	Thale cress	nucleus	68.06	71.43
KRH47743	Soybean	nucleus	70.83	70.25
KRH06320	Soybean	nucleus	70.0	69.42
CDY58227	Canola	nucleus	67.22	69.34
CDY07134	Canola	nucleus	67.22	69.34
PGSC0003DMT400001077	Potato	cytosol	68.33	69.3
Bra036325.1-P	Field mustard	nucleus	67.22	69.14
GSMUA_Achr8P29710_001	Banana	plastid	64.44	67.25
GSMUA_Achr8P13740_001	Banana	nucleus	62.22	63.64
CDY72499	Canola	mitochondrion	12.22	43.14
CDY70768	Canola	plastid	31.11	39.3
Zm00001d014626_P002	Maize	plastid	25.83	31.74
Zm00001d051801_P002	Maize	golgi	21.39	28.62
CDY18814	Canola	cytosol	20.0	25.71
TraesCS3B01G302100.1	Wheat	nucleus	30.28	20.3

Protein Annotations

EMBL:BT042155	EnsemblPlants:Zm00001d011121_P001	EnsemblPlants:Zm00001d011121_T001	EnsemblPlantsGene:Zm00001d011121	EntrezGene:100273986	Gene3D:3.40.50.10480
InterPro:Brix	InterPro:IPR007109	ncoils:Coil	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	PFAM:PF04427
PFscan:PS50833	ProteinID:AQK95800.1	SEG:seg	SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI00017B7C21
UniProt:B4FYG7	MapMan:17.1.2.2.1.4	:	:	:	:

Description

Ribosomal RNA processing Brix domain protein

Coordinates

chr8:+:139540392..139546514

Molecular Weight (calculated)

41531.7 Da

IEP (calculated)

10.706

GRAVY (calculated)

-0.974

Length

360 amino acids

Sequence
(BLAST)

001: MVKENKRKQP PADAAPPPGD EGEGRSGRKG KKARKEKAEA ILPSQIKNKD KRREVHAKLK REKKAQKRAL ARERGQAARR AEELGEQPPE RQVPRTIENT
101: REPDETVCRP DDQELFAGND ADEFSAVLKQ HITPKILITT CRFNSGRGPA FIDELMQVIP NSQYVKRGTY ELKKIVEYAN NRDFTSLVVV HTNRREPDAL
201: LIIGLPDGPT AHFKLSKLVL RKDIKNHGNP TSHKPELVLN NFTTRLGHRV GRMIQSLFPQ DPNFRGRRVV TFHNQRDYIF FRHHRYIFET KEKKVASKEK
301: TSGSKSGSEK QQVICRLQEC GPRFTLKLLT LQHGTFDTRS GEYEWVHKPD MDTSRRRFFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.