Factsheet for PGSC0003DMT400001077

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066280.1.1	Tomato	nucleus	93.52	99.1
VIT_07s0031g03160.t01	Wine grape	nucleus	76.9	78.9
VIT_14s0036g01520.t01	Wine grape	nucleus	76.34	78.32
KRH47743	Soybean	nucleus	78.03	76.31
KRH06320	Soybean	nucleus	77.46	75.76
AT4G01560.1	Thale cress	nucleus	72.11	74.64
CDY07134	Canola	nucleus	72.68	73.93
CDY58227	Canola	nucleus	72.39	73.64
Bra036325.1-P	Field mustard	nucleus	72.39	73.43
GSMUA_Achr8P29700_001	Banana	nucleus	62.82	70.35
Zm00001d011121_P001	Maize	nucleus, plasma membrane	69.3	68.33
TraesCS7A01G077100.1	Wheat	nucleus	67.89	67.7
TraesCS4A01G375600.1	Wheat	nucleus	67.89	67.7
TraesCS7D01G072700.1	Wheat	nucleus	67.61	67.42
EER89152	Sorghum	nucleus	68.73	67.4
GSMUA_Achr8P29710_001	Banana	plastid	63.66	65.51
HORVU7Hr1G018900.26	Barley	nucleus	65.92	64.11
GSMUA_Achr8P13740_001	Banana	nucleus	61.41	61.93
Os06t0137500-02	Rice	nucleus	65.07	58.93
CDY72499	Canola	mitochondrion	12.68	44.12
CDY70768	Canola	plastid	31.55	39.3
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	26.48	29.01
Zm00001d051801_P002	Maize	golgi	21.13	27.88
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	12.39	26.35
CDY18814	Canola	cytosol	20.0	25.36
TraesCS3B01G302100.1	Wheat	nucleus	30.14	19.93

Protein Annotations

EMBL:DQ284478	EnsemblPlants:PGSC0003DMT400001077	EnsemblPlantsGene:PGSC0003DMG400000409	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109
ncoils:Coil	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	PFAM:PF04427	PFscan:PS50833	PGSC:PGSC0003DMG400000409
ProteinID:ABB86266	ProteinID:ABB86266.1	SEG:seg	SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI0002957E44
UniProt:M0ZHV3	MapMan:17.1.2.2.1.4	:	:	:	:

Description

RNA processing factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000409]

Coordinates

chr11:+:39031215..39037249

Molecular Weight (calculated)

41462.8 Da

IEP (calculated)

10.487

GRAVY (calculated)

-1.019

Length

355 amino acids

Sequence
(BLAST)

001: MGRKRNLSED GGREDEEEKP MKERRVKEKQ EGRESMRPSM IKNKEKRAVV HAKLKQQKKV EKRKKVKARE AAEKKALELG EEPPPKMVPR TIENTRESDE
101: TVCLPDDEEL FAGNDVDEFS AVLKNERSPK ILITTSRYNS TRGPAFISDL ISVIPNAHYY KRGTYDLKKI VQYANEKEFT SVIVVHTNRR EPDALLVIGL
201: PDGPTAHFKL SKLMLRKDIK NHGKPTSHKP ELVLTNFTTR LGHRVGRMIQ SLFPQDPEFR GRRVVTFHNQ RDFIFFRHHR YIFETKESKQ KESKGKKSKD
301: EKNPPERTIA RLQECGPRFT LKLISLQHGT FDTKGGEYEW VHKPEMDTSR RRFFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.