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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 3
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g007250.2.1 Tomato nucleus 89.51 98.98
PGSC0003DMT400001044 Potato mitochondrion, nucleus 48.77 94.61
VIT_13s0019g00850.t01 Wine grape mitochondrion, nucleus 81.48 90.1
KRH29998 Soybean nucleus 77.47 85.67
Solyc11g065980.1.1 Tomato cytosol 70.99 84.87
KRH62883 Soybean endoplasmic reticulum 75.93 83.96
GSMUA_Achr9P00390_001 Banana mitochondrion, nucleus 52.47 83.74
Os08t0155000-01 Rice nucleus 71.6 79.18
TraesCS7B01G201700.1 Wheat mitochondrion, nucleus 70.68 78.16
HORVU7Hr1G071450.1 Barley nucleus 70.68 78.16
Bra027789.1-P Field mustard mitochondrion, nucleus 70.68 77.89
CDY08321 Canola mitochondrion, nucleus 70.68 77.89
TraesCS7A01G301400.1 Wheat mitochondrion, nucleus 70.37 77.82
TraesCS7D01G296800.1 Wheat nucleus 70.37 77.82
EER90306 Sorghum mitochondrion, nucleus 70.06 77.47
Zm00001d014626_P002 Maize plastid 70.06 77.47
AT1G63780.1 Thale cress mitochondrion, nucleus 70.06 77.21
CDY71038 Canola mitochondrion, nucleus 70.68 76.85
EES14567 Sorghum mitochondrion 64.2 70.99
KRH25985 Soybean cytosol 13.27 42.16
GSMUA_AchrUn_... Banana extracellular, plasma membrane, plastid 17.59 38.0
PGSC0003DMT400001077 Potato cytosol 29.01 26.48
Protein Annotations
EnsemblPlants:PGSC0003DMT400042226EnsemblPlantsGene:PGSC0003DMG400016389EntrezGene:102582396Gene3D:3.40.50.10480InterPro:BrixInterPro:IPR007109
ncoils:CoilPANTHER:PTHR22734PANTHER:PTHR22734:SF2PFAM:PF04427PFscan:PS50833PGSC:PGSC0003DMG400016389
SMART:SM00879SUPFAM:SSF52954UniParc:UPI000296BB5AUniProt:M1BCQ0MapMan:17.1.3.2.1.1.2:
Description
U3 small nucleolar ribonucleoprotein protein imp4 [Source:PGSC_GENE;Acc:PGSC0003DMG400016389]
Coordinates
chr1:-:3241446..3246080
Molecular Weight (calculated)
37363.1 Da
IEP (calculated)
9.640
GRAVY (calculated)
-0.603
Length
324 amino acids
Sequence
(BLAST)
001: MHRRNIRLRR EYLYRKSLEG KERLLYEKKR KIREALEEGK PIPTELRNEE AALRKEIDLE DEITAVPRST IDDEYANAPE KDPKILLTTS RNPSAPLTQF
101: VKELKIVFPN AQRMNRGGQV ISEIIETCRS HDFTDVILVH ENRGVPDGIV ISHLPFGPTA YFGLLNVVTR HDIKDKKSMG TMSEAYPHLI FDKFSTKLGD
201: RTVNILKHLF PVPKPDTKRI LTFANQSDYI SFRRCCSDSS KMSMRACRIL PNSVFGEFNT GATTHHVYEK NGGPKSIELK EVGPRFELRL YQIKLGTMEQ
301: DEAQIEWVIK PYMNTSKKRT LLGD
Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)
001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
Arabidopsis Description
IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.