CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71038	Canola	mitochondrion, nucleus	100.0	98.66
AT1G63780.1	Thale cress	mitochondrion, nucleus	83.67	83.67
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	44.56	78.44
Solyc01g007250.2.1	Tomato	nucleus	77.55	77.82
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	77.21	77.47
KRH29998	Soybean	nucleus	76.53	76.79
KRH62883	Soybean	endoplasmic reticulum	74.83	75.09
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	51.36	74.38
Os08t0155000-01	Rice	nucleus	71.77	72.01
HORVU7Hr1G071450.1	Barley	nucleus	71.09	71.33
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	70.75	70.99
TraesCS7D01G296800.1	Wheat	nucleus	70.75	70.99
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	77.89	70.68
EER90306	Sorghum	mitochondrion, nucleus	70.41	70.65
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	70.41	70.65
Zm00001d014626_P002	Maize	plastid	70.41	70.65
Solyc11g065980.1.1	Tomato	cytosol	61.56	66.79
EES14567	Sorghum	mitochondrion	64.29	64.51
KRH25985	Soybean	cytosol	14.97	43.14
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	17.01	33.33
CDY07134	Canola	nucleus	30.27	25.5
CDY58227	Canola	nucleus	29.93	25.21
CDY72499	Canola	mitochondrion	8.5	24.51
CDY18814	Canola	cytosol	18.03	18.93
CDY70768	Canola	plastid	17.01	17.54

Protein Annotations

EnsemblPlants:CDY08321	EnsemblPlantsGene:GSBRNA2T00000012001	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109	ncoils:Coil
PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	PFAM:PF04427	PFscan:PS50833	ProteinID:CDY08321	ProteinID:CDY08321.1
SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI0002541A85	UniProt:A0A078F4I0	MapMan:17.1.3.2.1.1.2	:

Description

BnaC09g12750DBnaC09g12750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4I0]

Coordinates

chrLK031985:-:94109..96330

Molecular Weight (calculated)

34430.4 Da

IEP (calculated)

9.730

GRAVY (calculated)

-0.732

Length

294 amino acids

Sequence
(BLAST)

001: MLRRNVRLRK EYLYRKNLEG NEREIYEKKR KIREALQEGK PIPTELRNEE AKLRQEIDLE DQNTAVPRSH IDDEYANATE KEPKILLTTS RDPSAPLTRF
101: VKELNIVFPN ASKLNRGSQV ISEIIETARS HDFTDVIFVS ENRGKPDGLI ISHLPFGPTA YFQLLNVVTR HEIQTKKEMG KMSEQYPHLI FERFTTQMGK
201: RVMNILKHIF PVPKLDAKRI VTFSNESDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTLEQ DEAEVEWVLR PYMNTAKKRK FLGE

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.