Factsheet for Solyc11g065980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007250.2.1	Tomato	nucleus	85.98	79.52
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	78.23	72.35
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	84.87	70.99
KRH29998	Soybean	nucleus	72.69	67.24
KRH62883	Soybean	endoplasmic reticulum	70.48	65.19
Os08t0155000-01	Rice	nucleus	69.37	64.16
Zm00001d014626_P002	Maize	plastid	68.63	63.48
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	68.63	63.48
HORVU7Hr1G071450.1	Barley	nucleus	68.63	63.48
EER90306	Sorghum	mitochondrion, nucleus	68.63	63.48
AT1G63780.1	Thale cress	mitochondrion, nucleus	68.63	63.27
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	68.27	63.14
TraesCS7D01G296800.1	Wheat	nucleus	68.27	63.14
CDY08321	Canola	mitochondrion, nucleus	66.79	61.56
Bra027789.1-P	Field mustard	mitochondrion, nucleus	66.79	61.56
CDY71038	Canola	mitochondrion, nucleus	66.79	60.74
EES14567	Sorghum	mitochondrion	63.84	59.04
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	36.16	58.68
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	43.54	58.13
KRH25985	Soybean	cytosol	15.87	42.16
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	21.03	38.0
Solyc11g066280.1.1	Tomato	nucleus	31.73	25.67
Solyc11g065960.1.1	Tomato	plasma membrane, plastid	9.59	15.48

Protein Annotations

MapMan:17.1.3.2.1.1.2	Gene3D:3.40.50.10480	InterPro:Brix	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515
GO:GO:0032040	GO:GO:0034457	GO:GO:0042134	InterPro:IPR007109	UniProt:K4D9K7	PFAM:PF04427
PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	SMART:SM00879	SUPFAM:SSF52954	EnsemblPlantsGene:Solyc11g065980.1
EnsemblPlants:Solyc11g065980.1.1	UniParc:UPI0002769C9B	:	:	:	:

Description

No Description!

Coordinates

chr11:+:51598632..51602204

Molecular Weight (calculated)

30895.4 Da

IEP (calculated)

8.229

GRAVY (calculated)

-0.286

Length

271 amino acids

Sequence
(BLAST)

001: MHEQVEHSGL LKCSLITFVS NCNCMCYVFA ITRLLSIFND VDAVPRSTID DEYANASEKD PKILLTTSRN PSAPLTQFVK ELKIVFPNAQ RMNRGGQVIS
101: EIIETCRSHD FTDVILVHEN RGVPDGIVIS HLPFGPTAYF GLLNVVTRHD IKDKKSMGTM SEAYPHLIFD KFSTKLGERT VNILKHLFPV PKPDTKRILT
201: FANQSDYISF RHHVYEKHGG PKSIELKEVG PRFELRLYQI KLGTMDQDEA QIEWVIKPYM NTSKKRTLLG D

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.