Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027789.1-P | Field mustard | mitochondrion, nucleus | 83.67 | 83.67 |
| CDY08321 | Canola | mitochondrion, nucleus | 83.67 | 83.67 |
| CDY71038 | Canola | mitochondrion, nucleus | 83.67 | 82.55 |
| VIT_13s0019g00850.t01 | Wine grape | mitochondrion, nucleus | 79.25 | 79.52 |
| KRH29998 | Soybean | nucleus | 77.21 | 77.47 |
| Solyc01g007250.2.1 | Tomato | nucleus | 76.87 | 77.13 |
| KRH62883 | Soybean | endoplasmic reticulum | 75.85 | 76.11 |
| PGSC0003DMT400001044 | Potato | mitochondrion, nucleus | 42.52 | 74.85 |
| GSMUA_Achr9P00390_001 | Banana | mitochondrion, nucleus | 50.34 | 72.91 |
| Os08t0155000-01 | Rice | nucleus | 70.75 | 70.99 |
| HORVU7Hr1G071450.1 | Barley | nucleus | 70.07 | 70.31 |
| PGSC0003DMT400042226 | Potato | mitochondrion, nucleus | 77.21 | 70.06 |
| TraesCS7D01G296800.1 | Wheat | nucleus | 69.73 | 69.97 |
| EER90306 | Sorghum | mitochondrion, nucleus | 69.73 | 69.97 |
| TraesCS7A01G301400.1 | Wheat | mitochondrion, nucleus | 69.39 | 69.62 |
| TraesCS7B01G201700.1 | Wheat | mitochondrion, nucleus | 69.39 | 69.62 |
| Zm00001d014626_P002 | Maize | plastid | 69.39 | 69.62 |
| Solyc11g065980.1.1 | Tomato | cytosol | 63.27 | 68.63 |
| EES14567 | Sorghum | mitochondrion | 64.97 | 65.19 |
| KRH25985 | Soybean | cytosol | 14.63 | 42.16 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane, plastid | 18.71 | 36.67 |
| AT4G01560.1 | Thale cress | nucleus | 33.33 | 28.57 |
Protein Annotations
| MapMan:17.1.3.2.1.1.2 | Gene3D:3.40.50.10480 | EntrezGene:842682 | UniProt:A0A178WDJ3 | ProteinID:AAG52427.1 | ProteinID:AAG52449.1 |
| ProteinID:AEE34148.1 | ArrayExpress:AT1G63780 | EnsemblPlantsGene:AT1G63780 | RefSeq:AT1G63780 | TAIR:AT1G63780 | RefSeq:AT1G63780-TAIR-G |
| EnsemblPlants:AT1G63780.1 | TAIR:AT1G63780.1 | EMBL:AY088147 | EMBL:AY093002 | EMBL:AY114605 | Unigene:At.43038 |
| InterPro:Brix | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0005732 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015030 |
| GO:GO:0016363 | GO:GO:0019013 | GO:GO:0030515 | GO:GO:0030529 | GO:GO:0032040 | GO:GO:0034457 |
| GO:GO:0042134 | Symbol:IMP4 | InterPro:IPR007109 | RefSeq:NP_176564.1 | ProteinID:OAP16296.1 | PFAM:PF04427 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50833 | PANTHER:PTHR22734 | PANTHER:PTHR22734:SF2 | UniProt:Q9S826 | SMART:SM00879 | SUPFAM:SSF52954 |
| UniParc:UPI000009D999 | : | : | : | : | : |
Description
IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
Coordinates
chr1:-:23664830..23667372
Molecular Weight (calculated)
34108.0 Da
IEP (calculated)
9.858
GRAVY (calculated)
-0.635
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.