CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29998	Soybean	nucleus	96.93	96.93
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	88.05	88.05
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	59.39	85.71
Solyc01g007250.2.1	Tomato	nucleus	83.62	83.62
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	46.42	81.44
Os08t0155000-01	Rice	nucleus	79.86	79.86
HORVU7Hr1G071450.1	Barley	nucleus	78.16	78.16
TraesCS7D01G296800.1	Wheat	nucleus	77.82	77.82
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	77.47	77.47
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	77.47	77.47
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	83.96	75.93
AT1G63780.1	Thale cress	mitochondrion, nucleus	76.11	75.85
Bra027789.1-P	Field mustard	mitochondrion, nucleus	75.09	74.83
CDY08321	Canola	mitochondrion, nucleus	75.09	74.83
EER90306	Sorghum	mitochondrion, nucleus	74.74	74.74
Zm00001d014626_P002	Maize	plastid	74.4	74.4
CDY71038	Canola	mitochondrion, nucleus	75.09	73.83
Solyc11g065980.1.1	Tomato	cytosol	65.19	70.48
EES14567	Sorghum	mitochondrion	68.26	68.26
KRH25985	Soybean	cytosol	17.41	50.0
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	20.14	39.33
KRH47743	Soybean	nucleus	31.4	25.34
KRH06320	Soybean	nucleus	31.4	25.34
KRG94166	Soybean	plastid	11.26	12.45

Protein Annotations

MapMan:17.1.3.2.1.1.2	Gene3D:3.40.50.10480	EMBL:ACUP02002396	InterPro:Brix	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G139900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034457	GO:GO:0042134
UniProt:I1JWH5	InterPro:IPR007109	EnsemblPlants:KRH62883	ProteinID:KRH62883	ProteinID:KRH62883.1	PFAM:PF04427
PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI000233A1F9

Description

hypothetical protein

Coordinates

chr4:-:22700584..22706138

Molecular Weight (calculated)

34138.4 Da

IEP (calculated)

9.888

GRAVY (calculated)

-0.577

Length

293 amino acids

Sequence
(BLAST)

001: MLRRNIRLRR EYLYRKSLEG KERLLYEKKR KIREALQEGK PIPTELRNEE AALRRAIDLE DENTAVPRTH IDDEYAYAAE KDPKILLTTS RDPSAPLQQF
101: VKELSFVFPN AQRMNRGGQV ISEIIESCRA HDYTDVVLVH EHRGVPDGLI VCHLPFGPTA YFGLLNVVTR HEIKDKKAIG TMPEAYPHLI LNNFSTKLGD
201: RTANIMKHLF PVPKLDTKRI VMFANQSDYI SFRHHIYEKN GSPKSIELKE IGPRFELRLY QIKLGTVDQA EAQIEWIIRP YMNTTKKRKF LSN

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.