CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06320	Soybean	nucleus	95.87	95.87
VIT_07s0031g03160.t01	Wine grape	nucleus	78.24	82.08
VIT_14s0036g01520.t01	Wine grape	nucleus	76.86	80.64
Solyc11g066280.1.1	Tomato	nucleus	74.38	80.6
PGSC0003DMT400001077	Potato	cytosol	76.31	78.03
AT4G01560.1	Thale cress	nucleus	71.9	76.09
CDY07134	Canola	nucleus	71.35	74.21
CDY58227	Canola	nucleus	71.35	74.21
Bra036325.1-P	Field mustard	nucleus	71.35	74.0
GSMUA_Achr8P29700_001	Banana	nucleus	63.36	72.56
Zm00001d011121_P001	Maize	nucleus, plasma membrane	70.25	70.83
EER89152	Sorghum	nucleus	69.97	70.17
TraesCS4A01G375600.1	Wheat	nucleus	67.49	68.82
TraesCS7A01G077100.1	Wheat	nucleus	67.49	68.82
TraesCS7D01G072700.1	Wheat	nucleus	67.22	68.54
GSMUA_Achr8P29710_001	Banana	plastid	64.19	67.54
HORVU7Hr1G018900.26	Barley	nucleus	65.56	65.21
GSMUA_Achr8P13740_001	Banana	nucleus	61.71	63.64
Os06t0137500-02	Rice	nucleus	65.56	60.71
CDY72499	Canola	mitochondrion	11.85	42.16
CDY70768	Canola	plastid	31.68	40.35
KRH29998	Soybean	nucleus	25.9	32.08
KRH62883	Soybean	endoplasmic reticulum	25.34	31.4
Zm00001d051801_P002	Maize	golgi	20.11	27.14
CDY18814	Canola	cytosol	20.66	26.79
KRH25985	Soybean	cytosol	7.16	25.49
TraesCS3B01G302100.1	Wheat	nucleus	29.75	20.11
KRG94166	Soybean	plastid	10.47	14.34

Protein Annotations

MapMan:17.1.2.2.1.4	Gene3D:3.40.50.10480	EMBL:ACUP02004162	InterPro:Brix	EnsemblPlantsGene:GLYMA_07G047700	GO:GO:0000027
GO:GO:0000460	GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030687	GO:GO:0042134
UniProt:I1KHL6	InterPro:IPR007109	EnsemblPlants:KRH47743	ProteinID:KRH47743	ProteinID:KRH47743.1	PFAM:PF04427
PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI0002337BFD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3995501..3999612

Molecular Weight (calculated)

41983.3 Da

IEP (calculated)

10.312

GRAVY (calculated)

-0.972

Length

363 amino acids

Sequence
(BLAST)

001: MGGKRKKSDD DDDVEAEAEA SGWKKKTRTT SEREKEKKEP LRPSMIKNKE KRSELHAKLK HQKKLEKRAK AKARDAALKK ALELGEEPPE KKVPRTIENT
101: RELDETVCKP DDEELFAGND ADEFGPILNQ QQTPKILITT CRFHSTRGPA FISELLSVIP NAHYFKRGTY DLKKIVEYAK KKDFTSIIVV HTNRREPDAL
201: LIIGVPDGPT AHFKLSKLVL RKDIKNHGNP TGHKPELVLN NFTTRLGHRV GRLIQSLFPQ DPEFKGRRVV TFHNQRDFIF FRHHRYIFET KEVKKAESKG
301: KKDKDGESEN VPEQKTIARL QECGPRFTLK LISLQHGTFD TKGGEYEWVH KPEMDTSRRR FFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.