Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G375600.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS7D01G072700.1 | Wheat | nucleus | 99.72 | 99.72 |
| HORVU7Hr1G018900.26 | Barley | nucleus | 95.79 | 93.42 |
| Zm00001d011121_P001 | Maize | nucleus, plasma membrane | 80.06 | 79.17 |
| EER89152 | Sorghum | nucleus | 80.34 | 79.01 |
| GSMUA_Achr8P29700_001 | Banana | nucleus | 64.89 | 72.87 |
| Os06t0137500-02 | Rice | nucleus | 78.65 | 71.43 |
| AT4G01560.1 | Thale cress | nucleus | 68.54 | 71.14 |
| Solyc11g066280.1.1 | Tomato | nucleus | 66.29 | 70.45 |
| CDY07134 | Canola | nucleus | 68.26 | 69.63 |
| CDY58227 | Canola | nucleus | 68.26 | 69.63 |
| Bra036325.1-P | Field mustard | nucleus | 68.26 | 69.43 |
| VIT_07s0031g03160.t01 | Wine grape | nucleus | 66.57 | 68.5 |
| VIT_14s0036g01520.t01 | Wine grape | nucleus | 66.29 | 68.21 |
| KRH06320 | Soybean | nucleus | 69.38 | 68.04 |
| PGSC0003DMT400001077 | Potato | cytosol | 67.7 | 67.89 |
| KRH47743 | Soybean | nucleus | 68.82 | 67.49 |
| GSMUA_Achr8P29710_001 | Banana | plastid | 64.61 | 66.67 |
| GSMUA_Achr8P13740_001 | Banana | nucleus | 62.36 | 63.07 |
| CDY72499 | Canola | mitochondrion | 12.64 | 44.12 |
| CDY70768 | Canola | plastid | 30.62 | 38.25 |
| TraesCS7A01G301400.1 | Wheat | mitochondrion, nucleus | 26.97 | 32.76 |
| CDY18814 | Canola | cytosol | 19.38 | 24.64 |
| TraesCS3B01G302100.1 | Wheat | nucleus | 32.02 | 21.23 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G077100.1 | EnsemblPlantsGene:TraesCS7A01G077100 | Gene3D:3.40.50.10480 | InterPro:Brix | InterPro:IPR007109 | ncoils:Coil |
| PANTHER:PTHR22734 | PANTHER:PTHR22734:SF3 | PFAM:PF04427 | PFscan:PS50833 | SEG:seg | SMART:SM00879 |
| SUPFAM:SSF52954 | MapMan:17.1.2.2.1.4 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:42303195..42308613
Molecular Weight (calculated)
41662.8 Da
IEP (calculated)
10.513
GRAVY (calculated)
-1.064
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREDRKRRQ PDGDEAADEG ERRGRRDKRP KEEKPAPPLP SEIRNKEKRS EVYAKLKREK KAQKRRLGRE RGQAAQRAAE LGEEVPEKQV PRTIENTREP
101: DETVCRPDDQ ELFAGNDADE FNAVLKQVVT PKVLITTCRF NSGRGPAFIK ELMQVIPNAQ YVNRGTYDLK KIVEYANNRE FTSVMVVHTN RREPDALLII
201: NLPEGPTAHF KLSKLVLRKD IKNHGNPTSH KPELVLNNFT TRLGHRVGRM IQSLFPQDPN FRGRRVVTFH NQRDYIFFRH HRYIFEEKEK KIVSKDKKSK
301: GETKTEKQIN CRLQECGPRF TLKLLTLQHG TFDTKSGEYE WVHKPDLDTS RRRFFL
101: DETVCRPDDQ ELFAGNDADE FNAVLKQVVT PKVLITTCRF NSGRGPAFIK ELMQVIPNAQ YVNRGTYDLK KIVEYANNRE FTSVMVVHTN RREPDALLII
201: NLPEGPTAHF KLSKLVLRKD IKNHGNPTSH KPELVLNNFT TRLGHRVGRM IQSLFPQDPN FRGRRVVTFH NQRDYIFFRH HRYIFEEKEK KIVSKDKKSK
301: GETKTEKQIN CRLQECGPRF TLKLLTLQHG TFDTKSGEYE WVHKPDLDTS RRRFFL
001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
Arabidopsis Description
MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.