CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72499	Canola	mitochondrion	18.6	51.96
CDY07134	Canola	nucleus	47.02	38.4
CDY58227	Canola	nucleus	46.67	38.11
AT4G01560.1	Thale cress	nucleus	42.81	35.57
VIT_07s0031g03160.t01	Wine grape	nucleus	41.4	34.1
VIT_14s0036g01520.t01	Wine grape	nucleus	41.05	33.81
GSMUA_Achr8P29700_001	Banana	nucleus	37.54	33.75
Solyc11g066280.1.1	Tomato	nucleus	38.95	33.13
EER89152	Sorghum	nucleus	40.35	31.77
KRH47743	Soybean	nucleus	40.35	31.68
PGSC0003DMT400001077	Potato	cytosol	39.3	31.55
KRH06320	Soybean	nucleus	40.0	31.41
GSMUA_Achr8P29710_001	Banana	plastid	37.89	31.3
Zm00001d011121_P001	Maize	nucleus, plasma membrane	39.3	31.11
TraesCS4A01G375600.1	Wheat	nucleus	38.25	30.62
TraesCS7A01G077100.1	Wheat	nucleus	38.25	30.62
TraesCS7D01G072700.1	Wheat	nucleus	37.89	30.34
HORVU7Hr1G018900.26	Barley	nucleus	38.25	29.86
GSMUA_Achr8P13740_001	Banana	nucleus	35.09	28.41
Os06t0137500-02	Rice	nucleus	38.25	27.81
Zm00001d051801_P002	Maize	golgi	22.46	23.79
CDY18814	Canola	cytosol	16.84	17.14
CDY08321	Canola	mitochondrion, nucleus	17.54	17.01
CDY71038	Canola	mitochondrion, nucleus	17.54	16.78
TraesCS3B01G302100.1	Wheat	nucleus	22.46	11.92

Protein Annotations

EnsemblPlants:CDY70768	EnsemblPlantsGene:GSBRNA2T00007329001	InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3
PFAM:PF04427	PFscan:PS50833	ProteinID:CDY70768	ProteinID:CDY70768.1	SEG:seg	SMART:SM00879
SUPFAM:SSF52954	UniParc:UPI0004EDDD02	UniProt:A0A078JT93	MapMan:17.1.2.2.1.4	:	:

Description

BnaAnng34930DBnaAnng34930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT93]

Coordinates

chrLK043249:+:446..2908

Molecular Weight (calculated)

32001.0 Da

IEP (calculated)

10.670

GRAVY (calculated)

-0.696

Length

285 amino acids

Sequence
(BLAST)

001: MISPPNPSPT SRNSPTSPRR RHGLGGLPRR ENLITNQLMK DLNSSNEYER GPGGTYDLKK VVEYAKKKDY TSLIVVHTTR REPDTLLIIG LPNGPAAHFK
101: LSNLVLRKDI KNHGNPTSHE QELVLNNFTT SLGNRVGRFF QSLFPQEPNF RGRRRDFIFF RHHRYIFDIK EDKQSGAKGK EGVAKERVKD ALLIDPALLA
201: SAQGVPDPSS DVRDSRAAPA RDLFFVRDSI RQLTSDDQSI PDQATKDICD LIEATRSITA RVPFVSSSRL NSFGGPIQQS SKVKR

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.