Factsheet for GSMUA_Achr8P29700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29710_001	Banana	plastid	85.17	78.26
GSMUA_Achr8P13740_001	Banana	nucleus	80.13	72.16
Solyc11g066280.1.1	Tomato	nucleus	70.35	66.57
VIT_14s0036g01520.t01	Wine grape	nucleus	71.92	65.9
VIT_07s0031g03160.t01	Wine grape	nucleus	71.92	65.9
TraesCS7A01G077100.1	Wheat	nucleus	72.87	64.89
TraesCS4A01G375600.1	Wheat	nucleus	72.87	64.89
TraesCS7D01G072700.1	Wheat	nucleus	72.56	64.61
EER89152	Sorghum	nucleus	73.5	64.36
Zm00001d011121_P001	Maize	nucleus, plasma membrane	72.56	63.89
KRH47743	Soybean	nucleus	72.56	63.36
KRH06320	Soybean	nucleus	72.56	63.36
AT4G01560.1	Thale cress	nucleus	68.45	63.27
PGSC0003DMT400001077	Potato	cytosol	70.35	62.82
CDY07134	Canola	nucleus	68.45	62.18
CDY58227	Canola	nucleus	68.14	61.89
Bra036325.1-P	Field mustard	nucleus	68.14	61.71
HORVU7Hr1G018900.26	Barley	nucleus	70.98	61.64
Os06t0137500-02	Rice	nucleus	69.72	56.38
CDY72499	Canola	mitochondrion	13.56	42.16
CDY70768	Canola	plastid	33.75	37.54
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	18.61	29.06
CDY18814	Canola	cytosol	22.4	25.36
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	10.09	21.33
TraesCS3B01G302100.1	Wheat	nucleus	29.65	17.5

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29700_001	EnsemblPlants:GSMUA_Achr8T29700_001	EnsemblPlantsGene:GSMUA_Achr8G29700_001	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109
PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	PFAM:PF04427	PFscan:PS50833	SEG:seg	SMART:SM00879
SUPFAM:SSF52954	UniParc:UPI000294F43D	UniProt:M0TUS2	MapMan:17.1.2.2.1.4	:	:

Description

Ribosome production factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G29700_001]

Coordinates

chr8:+:32014395..32019233

Molecular Weight (calculated)

36704.9 Da

IEP (calculated)

10.391

GRAVY (calculated)

-0.944

Length

317 amino acids

Sequence
(BLAST)

001: MGGGGGKREK AEGSDVDEHE TRDKKKTKKG TTLPSMIKNK EKRSAPPEKK VPRTIENTRE VDETVCRPDD EELFAGNDAD EFSQVLKQEV TPKILITTNR
101: FNSTRGPAFI QELLSVIPNA HYHKRGTYEL KKIVEYAKNK DFTSVMVVHS NRREPDALLI INLPDGPTAH FKLSKLVLRK DIKNHGNPTD HKPELVLNNF
201: TTRLGHRVGR MIQSLFPQDP NFRGRRVVTF HNQRDFIFFR HHRYIFESRE KKDDSKDKAA KSKNITQEKV IVRLQECGPR FTLKLRNLQH GTFDSKGGEY
301: ECVHKPEMDT SRRRFFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.