Factsheet for GSMUA_Achr9P00390_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	65.52	79.64
KRH29998	Soybean	nucleus	86.7	60.07
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	86.21	59.73
KRH62883	Soybean	endoplasmic reticulum	85.71	59.39
Solyc01g007250.2.1	Tomato	nucleus	83.74	58.02
Os08t0155000-01	Rice	nucleus	83.25	57.68
TraesCS7D01G296800.1	Wheat	nucleus	82.76	57.34
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	82.76	57.34
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	82.76	57.34
HORVU7Hr1G071450.1	Barley	nucleus	82.76	57.34
EER90306	Sorghum	mitochondrion, nucleus	75.86	52.56
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	83.74	52.47
Zm00001d014626_P002	Maize	plastid	75.37	52.22
CDY08321	Canola	mitochondrion, nucleus	74.38	51.36
Bra027789.1-P	Field mustard	mitochondrion, nucleus	74.38	51.36
CDY71038	Canola	mitochondrion, nucleus	74.38	50.67
AT1G63780.1	Thale cress	mitochondrion, nucleus	72.91	50.34
EES14567	Sorghum	mitochondrion	70.44	48.81
Solyc11g065980.1.1	Tomato	cytosol	58.13	43.54
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	30.05	40.67
KRH25985	Soybean	cytosol	18.23	36.27
GSMUA_Achr8P29700_001	Banana	nucleus	29.06	18.61
GSMUA_Achr8P29710_001	Banana	plastid	28.08	16.52
GSMUA_Achr8P13740_001	Banana	nucleus	26.11	15.06

Protein Annotations

EnsemblPlants:GSMUA_Achr9P00390_001	EnsemblPlants:GSMUA_Achr9T00390_001	EnsemblPlantsGene:GSMUA_Achr9G00390_001	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109
ncoils:Coil	PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	PFAM:PF04427	PFscan:PS50833	SEG:seg
SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI000296E830	UniProt:M0TW96	MapMan:35.2	:

Description

U3 small nucleolar ribonucleoprotein protein IMP4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00390_001]

Coordinates

chr9:-:398552..400139

Molecular Weight (calculated)

23627.4 Da

IEP (calculated)

7.631

GRAVY (calculated)

-0.585

Length

203 amino acids

Sequence
(BLAST)

001: MLRRNTRLRR EYLYRKSLEG KEREYYEKKR KIREALEEGK PIPTELRNEE AALRQEIDLE DEYTAVPRTH IDDEYATASE KDPRILLTTS RNPSQPLTQF
101: VKELKIVFPN STRMNRGGQV ISEIIESCRA HEFTDVVLVH EHRGQPDGLI VCHLPFGPTA YFGLLNVVTR HDIKDKKAVG TMSEAYPHLI LDNFMSKVCL
201: FIV

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.