Factsheet for Os08t0155000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G071450.1	Barley	nucleus	93.86	93.86
TraesCS7D01G296800.1	Wheat	nucleus	93.52	93.52
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	93.17	93.17
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	93.17	93.17
EER90306	Sorghum	mitochondrion, nucleus	85.67	85.67
Zm00001d014626_P002	Maize	plastid	85.32	85.32
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	57.68	83.25
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	81.91	81.91
KRH29998	Soybean	nucleus	81.91	81.91
Solyc01g007250.2.1	Tomato	nucleus	80.2	80.2
KRH62883	Soybean	endoplasmic reticulum	79.86	79.86
EES14567	Sorghum	mitochondrion	78.84	78.84
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	43.0	75.45
CDY08321	Canola	mitochondrion, nucleus	72.01	71.77
Bra027789.1-P	Field mustard	mitochondrion, nucleus	72.01	71.77
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	79.18	71.6
CDY71038	Canola	mitochondrion, nucleus	72.01	70.81
AT1G63780.1	Thale cress	mitochondrion, nucleus	70.99	70.75
Solyc11g065980.1.1	Tomato	cytosol	64.16	69.37
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	21.16	41.33
KRH25985	Soybean	cytosol	14.33	41.18
Os06t0137500-02	Rice	nucleus	31.4	23.47

Protein Annotations

MapMan:17.1.3.2.1.1.2	Gene3D:3.40.50.10480	EntrezGene:4344688	EMBL:AK060859	ProteinID:BAC99390.1	ProteinID:BAT03880.1
InterPro:Brix	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016363	GO:GO:0030515
GO:GO:0032040	GO:GO:0034457	GO:GO:0042134	InterPro:IPR007109	EnsemblPlantsGene:Os08g0155000	EnsemblPlants:Os08t0155000-01
PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	UniProt:Q6ZJR6	SMART:SM00879
SUPFAM:SSF52954	UniParc:UPI00001D8CCF	RefSeq:XP_015648203.1	SEG:seg	:	:

Description

Similar to predicted protein. (Os08t0155000-01);Brix domain containing protein. (Os08t0155000-02)

Coordinates

chr8:-:3166823..3170553

Molecular Weight (calculated)

33918.9 Da

IEP (calculated)

10.110

GRAVY (calculated)

-0.729

Length

293 amino acids

Sequence
(BLAST)

001: MLRRNTRLRR EYLYRKSLEG KERQHYEKKR RLREALDEGK PIPTELRNEE LALRREIDLE DKDSAVPRSL IDDEYAGAAL REPKILLTTS RNPSAPLTQF
101: VKELKVVFPN SQRMNRGGQV ISEIVESCRS HDITDLVLVH EHRGQPDGLI VCHLPFGPTA YFGLLNVVTR HDIKDRKAMG KMSEAYPHLI LDNFTTKTGE
201: RTANIVKHLF PVPKPDSKRI ITFANRDDYI SFRHHVYEKH GGPKSLDLKE VGPRFELRLY QIKRGTVDQA EAQNEFVLRP YMNTAKKQKS LGA

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.