Factsheet for Zm00001d014626_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

plastid: 22065420
plastid: 23198870
plasma membrane: 27341663

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90306	Sorghum	mitochondrion, nucleus	98.63	98.63
EES14567	Sorghum	mitochondrion	86.69	86.69
HORVU7Hr1G071450.1	Barley	nucleus	85.67	85.67
TraesCS7D01G296800.1	Wheat	nucleus	85.32	85.32
Os08t0155000-01	Rice	nucleus	85.32	85.32
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	84.98	84.98
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	84.98	84.98
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	78.84	78.84
Solyc01g007250.2.1	Tomato	nucleus	77.47	77.47
KRH29998	Soybean	nucleus	76.11	76.11
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	52.22	75.37
KRH62883	Soybean	endoplasmic reticulum	74.4	74.4
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	41.3	72.46
Bra027789.1-P	Field mustard	mitochondrion, nucleus	70.65	70.41
CDY08321	Canola	mitochondrion, nucleus	70.65	70.41
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	77.47	70.06
CDY71038	Canola	mitochondrion, nucleus	70.65	69.46
AT1G63780.1	Thale cress	mitochondrion, nucleus	69.62	69.39
Solyc11g065980.1.1	Tomato	cytosol	63.48	68.63
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	19.8	38.67
KRH25985	Soybean	cytosol	12.63	36.27
Zm00001d011121_P001	Maize	nucleus, plasma membrane	31.74	25.83
Zm00001d051801_P002	Maize	golgi	16.38	17.84

Protein Annotations

EMBL:BT037145	EnsemblPlants:Zm00001d014626_P002	EnsemblPlants:Zm00001d014626_T002	EnsemblPlantsGene:Zm00001d014626	EntrezGene:100216667	Gene3D:3.40.50.10480
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016363	InterPro:Brix
InterPro:IPR007109	PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	PFAM:PF04427	PFscan:PS50833	ProteinID:AQK66670.1
SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI00017B7359	UniProt:B4FJ57	MapMan:17.1.3.2.1.1.2	:

Description

Ribosomal RNA processing Brix domain protein

Coordinates

chr5:-:56455238..56460704

Molecular Weight (calculated)

33899.9 Da

IEP (calculated)

10.234

GRAVY (calculated)

-0.683

Length

293 amino acids

Sequence
(BLAST)

001: MLRRNIRQRR EYLYSKSLEG PQRALFEKKR RIRAALEEGK PIPTELRNEE HDLRRQIDLE DQERQVPKSI VDNEYATATI REPKILLTTS RNPSAPLTQF
101: VKELKVVFPN SQRMNRGGQV ISEIVEACRS HDITDLILVH EHRGQPDGLI VSHLPHGPTA YFGLLNVVTR HDIKDRKTMG KMSEAYPHLI LDNFSTQIGE
201: RTATILKHLF PVPKPDSKRI ITFANRDDYI SFRHHVYEKP GGPKSIDLKE VGPRFELRLY QIKLGTVEQK EAQSEFVLRP YINTAKKQKT LGA

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.