Factsheet for Solyc01g007250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	53.92	94.61
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	90.78	90.78
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	98.98	89.51
KRH29998	Soybean	nucleus	86.01	86.01
Solyc11g065980.1.1	Tomato	cytosol	79.52	85.98
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	58.02	83.74
KRH62883	Soybean	endoplasmic reticulum	83.62	83.62
Os08t0155000-01	Rice	nucleus	80.2	80.2
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	79.18	79.18
HORVU7Hr1G071450.1	Barley	nucleus	79.18	79.18
TraesCS7D01G296800.1	Wheat	nucleus	78.84	78.84
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	78.84	78.84
Bra027789.1-P	Field mustard	mitochondrion, nucleus	77.82	77.55
CDY08321	Canola	mitochondrion, nucleus	77.82	77.55
EER90306	Sorghum	mitochondrion, nucleus	77.47	77.47
Zm00001d014626_P002	Maize	plastid	77.47	77.47
AT1G63780.1	Thale cress	mitochondrion, nucleus	77.13	76.87
CDY71038	Canola	mitochondrion, nucleus	77.82	76.51
EES14567	Sorghum	mitochondrion	70.99	70.99
KRH25985	Soybean	cytosol	14.68	42.16
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	19.45	38.0
Solyc11g066280.1.1	Tomato	nucleus	32.42	28.36
Solyc11g065960.1.1	Tomato	plasma membrane, plastid	10.92	19.05

Protein Annotations

MapMan:17.1.3.2.1.1.2	Gene3D:3.40.50.10480	InterPro:Brix	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030515	GO:GO:0032040	GO:GO:0034457	GO:GO:0042134	InterPro:IPR007109	UniProt:K4ASU1
PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	SMART:SM00879	SUPFAM:SSF52954
EnsemblPlantsGene:Solyc01g007250.2	EnsemblPlants:Solyc01g007250.2.1	UniParc:UPI00027628F0	:	:	:

Description

No Description!

Coordinates

chr1:-:1809283..1813878

Molecular Weight (calculated)

34033.1 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.642

Length

293 amino acids

Sequence
(BLAST)

001: MHRRNIRLRR EYLYRKSLEG KERLLYEKKR KIREALEEGK PIPTELRNEE AALRKEIDLE DEITAVPRST IDDEYANAPE KDPKILLTTS RNPSAPLTQF
101: VKELKIVFPN AQRMNRGGQV ISEIIETCRS HDFTDVILVH ENRGVPDGIV ISHLPFGPTA YFGLLNVVTR HDIKDKKSMG TMSEAYPHLI FDKFSTKLGE
201: RTVNILKHLF PVPKPDTKRI LTFANQSDYI SFRHHVYEKH GGPKSIELKE VGPRFELRLY QIKLGTMDQD EAQIEWVIKP YMNTSKKRTL LGD

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.