Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001077 | Potato | cytosol | 99.1 | 93.52 |
| VIT_07s0031g03160.t01 | Wine grape | nucleus | 80.3 | 77.75 |
| VIT_14s0036g01520.t01 | Wine grape | nucleus | 79.7 | 77.17 |
| KRH47743 | Soybean | nucleus | 80.6 | 74.38 |
| KRH06320 | Soybean | nucleus | 80.0 | 73.83 |
| AT4G01560.1 | Thale cress | nucleus | 74.33 | 72.59 |
| CDY07134 | Canola | nucleus | 74.63 | 71.63 |
| CDY58227 | Canola | nucleus | 74.33 | 71.35 |
| Bra036325.1-P | Field mustard | nucleus | 74.33 | 71.14 |
| GSMUA_Achr8P29700_001 | Banana | nucleus | 66.57 | 70.35 |
| Zm00001d011121_P001 | Maize | nucleus, plasma membrane | 72.84 | 67.78 |
| EER89152 | Sorghum | nucleus | 72.24 | 66.85 |
| TraesCS4A01G375600.1 | Wheat | nucleus | 70.45 | 66.29 |
| TraesCS7A01G077100.1 | Wheat | nucleus | 70.45 | 66.29 |
| TraesCS7D01G072700.1 | Wheat | nucleus | 70.15 | 66.01 |
| GSMUA_Achr8P29710_001 | Banana | plastid | 66.87 | 64.93 |
| HORVU7Hr1G018900.26 | Barley | nucleus | 68.36 | 62.74 |
| GSMUA_Achr8P13740_001 | Banana | nucleus | 64.18 | 61.08 |
| Os06t0137500-02 | Rice | nucleus | 68.66 | 58.67 |
| CDY72499 | Canola | mitochondrion | 13.43 | 44.12 |
| CDY70768 | Canola | plastid | 33.13 | 38.95 |
| Solyc01g007250.2.1 | Tomato | nucleus | 28.36 | 32.42 |
| Solyc11g065980.1.1 | Tomato | cytosol | 25.67 | 31.73 |
| Zm00001d051801_P002 | Maize | golgi | 22.39 | 27.88 |
| CDY18814 | Canola | cytosol | 21.19 | 25.36 |
| TraesCS3B01G302100.1 | Wheat | nucleus | 30.45 | 18.99 |
| Solyc11g065960.1.1 | Tomato | plasma membrane, plastid | 8.06 | 16.07 |
Protein Annotations
| MapMan:17.1.2.2.1.4 | Gene3D:3.40.50.10480 | InterPro:Brix | ncoils:Coil | GO:GO:0000027 | GO:GO:0000460 |
| GO:GO:0000470 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030687 | GO:GO:0042134 | InterPro:IPR007109 |
| UniProt:K4D9N6 | PFAM:PF04427 | PFscan:PS50833 | PANTHER:PTHR22734 | PANTHER:PTHR22734:SF3 | SMART:SM00879 |
| SUPFAM:SSF52954 | EnsemblPlantsGene:Solyc11g066280.1 | EnsemblPlants:Solyc11g066280.1.1 | UniParc:UPI0002769E28 | SEG:seg | : |
Description
No Description!
Coordinates
chr11:+:52009239..52014990
Molecular Weight (calculated)
39125.2 Da
IEP (calculated)
10.594
GRAVY (calculated)
-0.942
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MKERRVKEKQ EGRESMRPSM IKNKEKRAAV HAKLKQQKKV EKRKKVKARE AAEKKALELG EEPPAKMVPR TIENTRESDE TVCLPDDEEL FAGNDVDEFS
101: AVLKNERSPK ILITTSRYNS TRGPAFISDL ISVIPNAHYY KRGTYDLKKI VQYANEKEFT SVIVVHTNRR EPDALLVIGL PDGPTAHFKL SKLMLRKDIK
201: NHGKPTSHKP ELVLTNFTTR LGHRVGRMIQ SLFPQDPEFR GRRVVTFHNQ RDFIFFRHHR YIFETKESKQ KESKGKKSKD EKNPQERTIA RLQECGPRFT
301: LKLISLQHGT FDTKGGEYEW VHKPEMDTSR RRFFL
101: AVLKNERSPK ILITTSRYNS TRGPAFISDL ISVIPNAHYY KRGTYDLKKI VQYANEKEFT SVIVVHTNRR EPDALLVIGL PDGPTAHFKL SKLMLRKDIK
201: NHGKPTSHKP ELVLTNFTTR LGHRVGRMIQ SLFPQDPEFR GRRVVTFHNQ RDFIFFRHHR YIFETKESKQ KESKGKKSKD EKNPQERTIA RLQECGPRFT
301: LKLISLQHGT FDTKGGEYEW VHKPEMDTSR RRFFL
001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
Arabidopsis Description
MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.