CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011121_P001	Maize	nucleus, plasma membrane	94.48	95.0
TraesCS7A01G077100.1	Wheat	nucleus	79.01	80.34
TraesCS4A01G375600.1	Wheat	nucleus	79.01	80.34
TraesCS7D01G072700.1	Wheat	nucleus	78.73	80.06
Os06t0137500-02	Rice	nucleus	83.98	77.55
HORVU7Hr1G018900.26	Barley	nucleus	76.8	76.16
GSMUA_Achr8P29700_001	Banana	nucleus	64.36	73.5
Solyc11g066280.1.1	Tomato	nucleus	66.85	72.24
VIT_14s0036g01520.t01	Wine grape	nucleus	68.78	71.97
AT4G01560.1	Thale cress	nucleus	67.96	71.72
VIT_07s0031g03160.t01	Wine grape	nucleus	67.96	71.1
KRH47743	Soybean	nucleus	70.17	69.97
CDY58227	Canola	nucleus	67.13	69.63
CDY07134	Canola	nucleus	67.13	69.63
Bra036325.1-P	Field mustard	nucleus	67.13	69.43
KRH06320	Soybean	nucleus	69.61	69.42
PGSC0003DMT400001077	Potato	cytosol	67.4	68.73
GSMUA_Achr8P29710_001	Banana	plastid	64.64	67.83
GSMUA_Achr8P13740_001	Banana	nucleus	61.88	63.64
CDY72499	Canola	mitochondrion	12.71	45.1
CDY70768	Canola	plastid	31.77	40.35
EER90306	Sorghum	mitochondrion, nucleus	25.14	31.06
EES14567	Sorghum	mitochondrion	23.2	28.67
CDY18814	Canola	cytosol	19.89	25.71
TraesCS3B01G302100.1	Wheat	nucleus	29.56	19.93

Protein Annotations

MapMan:17.1.2.2.1.4	Gene3D:3.40.50.10480	EntrezGene:8068415	InterPro:Brix	UniProt:C5Z3G3	ncoils:Coil
EnsemblPlants:EER89152	ProteinID:EER89152	ProteinID:EER89152.1	GO:GO:0000003	GO:GO:0000027	GO:GO:0000460
GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0030687	GO:GO:0042134	InterPro:IPR007109
PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	SMART:SM00879	EnsemblPlantsGene:SORBI_3010G027800
SUPFAM:SSF52954	unigene:Sbi.8461	UniParc:UPI0001A89AAA	RefSeq:XP_002437785.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:2276443..2281571

Molecular Weight (calculated)

41839.2 Da

IEP (calculated)

10.698

GRAVY (calculated)

-0.992

Length

362 amino acids

Sequence
(BLAST)

001: MAKEKKRKQP PADAAPPPGD DGEGRSGRKG KKARKEKAEA ILPSQIKNKD KRREVHAKLK REKKAQKRAL ARERGQAARR AEELGEQPPE RQVPRTIENT
101: REPDETVCRP DDQELFAGND ADEFNAVLKQ HITPKILITT CRFNSGRGPA FIDELMQVIP NSHYVKRGTY ELKKIVDYAK NRDFTSLIVV HTNRREPDAL
201: LIIGLPDGPT AHFKLSKLVL RKDIKNHGNP TSHKPELVLN NFTTRLGHRV GRMIQSLFPQ DPNFRGRRVV TFHNQRDYIF FRHHRYIFDT KEKKVASKDK
301: KAKTSESKSE SEKQVICRLQ ECGPRFVLKL LTLQHGTFDT KSGEYEWVHK PDMDTSRRRF FL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.