Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G077100.1 | Wheat | nucleus | 93.42 | 95.79 |
| TraesCS4A01G375600.1 | Wheat | nucleus | 93.42 | 95.79 |
| TraesCS7D01G072700.1 | Wheat | nucleus | 93.15 | 95.51 |
| Zm00001d011121_P001 | Maize | nucleus, plasma membrane | 75.89 | 76.94 |
| EER89152 | Sorghum | nucleus | 76.16 | 76.8 |
| Os06t0137500-02 | Rice | nucleus | 76.44 | 71.17 |
| GSMUA_Achr8P29700_001 | Banana | nucleus | 61.64 | 70.98 |
| AT4G01560.1 | Thale cress | nucleus | 64.38 | 68.51 |
| Solyc11g066280.1.1 | Tomato | nucleus | 62.74 | 68.36 |
| CDY07134 | Canola | nucleus | 64.66 | 67.62 |
| CDY58227 | Canola | nucleus | 64.66 | 67.62 |
| Bra036325.1-P | Field mustard | nucleus | 64.66 | 67.43 |
| VIT_07s0031g03160.t01 | Wine grape | nucleus | 63.56 | 67.05 |
| VIT_14s0036g01520.t01 | Wine grape | nucleus | 63.29 | 66.76 |
| KRH06320 | Soybean | nucleus | 65.75 | 66.12 |
| PGSC0003DMT400001077 | Potato | cytosol | 64.11 | 65.92 |
| KRH47743 | Soybean | nucleus | 65.21 | 65.56 |
| GSMUA_Achr8P29710_001 | Banana | plastid | 61.37 | 64.93 |
| GSMUA_Achr8P13740_001 | Banana | nucleus | 59.18 | 61.36 |
| CDY72499 | Canola | mitochondrion | 12.05 | 43.14 |
| CDY70768 | Canola | plastid | 29.86 | 38.25 |
| HORVU7Hr1G071450.1 | Barley | nucleus | 26.03 | 32.42 |
| CDY18814 | Canola | cytosol | 18.63 | 24.29 |
| TraesCS3B01G302100.1 | Wheat | nucleus | 30.68 | 20.86 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G018900.26 | EnsemblPlantsGene:HORVU7Hr1G018900 | Gene3D:3.40.50.10480 | InterPro:Brix | InterPro:IPR007109 | ncoils:Coil |
| PANTHER:PTHR22734 | PANTHER:PTHR22734:SF3 | PFAM:PF04427 | PFscan:PS50833 | SEG:seg | SMART:SM00879 |
| SUPFAM:SSF52954 | UniParc:UPI000B472F3E | UniProt:A0A287VLA1 | MapMan:17.1.2.2.1.4 | : | : |
Description
No Description!
Coordinates
chrchr7H:-:25444714..25514583
Molecular Weight (calculated)
42449.8 Da
IEP (calculated)
10.388
GRAVY (calculated)
-0.934
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: VREDRKRRQP DDEAADEDER RGRRDKRPKE EKSAPPLPSE IRNKEKRSEV YAKLKREKKA QKRRLGRERG QAAQRAAELG EEVPEKQVPR TIENTREPDE
101: TVCRPDDQEL FAGNDADEFN AVLKQVVTPK VLITTCRFNS GRGPAFIKEL MQVIPNAQYV NRGTYDLKKI VEYANNREFT SVMVVHTNRR EPDALLIINL
201: PEGPTAHFKL SKLVLRKDIK NHGNPTSHKP ELVLNNFTTR LGHRVGRMIQ SLFPQDPNFR GRRVVTFHNQ RDYIFFRHHR YIFEEKEKKI VSKDKKSKGE
301: TKTEKQVNCR LQECGPRFTL KLLTLQHGTF DTKSGEYEWV HKVLLSSSSY IHHSTLLAAL LIPVT
101: TVCRPDDQEL FAGNDADEFN AVLKQVVTPK VLITTCRFNS GRGPAFIKEL MQVIPNAQYV NRGTYDLKKI VEYANNREFT SVMVVHTNRR EPDALLIINL
201: PEGPTAHFKL SKLVLRKDIK NHGNPTSHKP ELVLNNFTTR LGHRVGRMIQ SLFPQDPNFR GRRVVTFHNQ RDYIFFRHHR YIFEEKEKKI VSKDKKSKGE
301: TKTEKQVNCR LQECGPRFTL KLLTLQHGTF DTKSGEYEWV HKVLLSSSSY IHHSTLLAAL LIPVT
001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
Arabidopsis Description
IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.