CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58227	Canola	nucleus	99.43	99.43
Bra036325.1-P	Field mustard	nucleus	99.43	99.14
AT4G01560.1	Thale cress	nucleus	87.97	89.5
VIT_07s0031g03160.t01	Wine grape	nucleus	75.36	76.01
VIT_14s0036g01520.t01	Wine grape	nucleus	75.07	75.72
Solyc11g066280.1.1	Tomato	nucleus	71.63	74.63
PGSC0003DMT400001077	Potato	cytosol	73.93	72.68
KRH47743	Soybean	nucleus	74.21	71.35
KRH06320	Soybean	nucleus	72.49	69.7
GSMUA_Achr8P29700_001	Banana	nucleus	62.18	68.45
TraesCS4A01G375600.1	Wheat	nucleus	69.63	68.26
TraesCS7A01G077100.1	Wheat	nucleus	69.63	68.26
TraesCS7D01G072700.1	Wheat	nucleus	69.34	67.98
Zm00001d011121_P001	Maize	nucleus, plasma membrane	69.34	67.22
EER89152	Sorghum	nucleus	69.63	67.13
HORVU7Hr1G018900.26	Barley	nucleus	67.62	64.66
GSMUA_Achr8P29710_001	Banana	plastid	62.18	62.9
GSMUA_Achr8P13740_001	Banana	nucleus	60.74	60.23
Os06t0137500-02	Rice	nucleus	66.76	59.44
CDY72499	Canola	mitochondrion	15.19	51.96
CDY70768	Canola	plastid	38.4	47.02
CDY08321	Canola	mitochondrion, nucleus	25.5	30.27
CDY71038	Canola	mitochondrion, nucleus	25.5	29.87
CDY18814	Canola	cytosol	21.49	26.79
Zm00001d051801_P002	Maize	golgi	20.63	26.77
TraesCS3B01G302100.1	Wheat	nucleus	30.37	19.74

Protein Annotations

EnsemblPlants:CDY07134	EnsemblPlantsGene:GSBRNA2T00123483001	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR22734
PANTHER:PTHR22734:SF3	PFAM:PF04427	PFscan:PS50833	ProteinID:CDY07134	ProteinID:CDY07134.1	SEG:seg
SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI0004EE485B	MapMan:17.1.2.2.1.4	:	:

Description

BnaCnng01490D

Coordinates

chrLK031975:+:401994..404649

Molecular Weight (calculated)

40536.6 Da

IEP (calculated)

10.412

GRAVY (calculated)

-0.896

Length

349 amino acids

Sequence
(BLAST)

001: MGFKRKKGDG EGEEMESEVR GRPSFNTAER RNVILPSMIK NKDKRAKVYA KQKHEKKVEK QKKIKARDAA EKQALELGEE PPQKMVPKTI ENTREADETV
101: CRPDDEELFA DIDADEFNPV LRREVTPKVL ITTCRFNSTR GPAFISELQS VIPNSDYRKR GTYDLKKIVE YAKKKDYTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHEPEL VLNNFTTRLG NRVGRFFQSL FPQEPNFRGR RVVTFHNQRD FIFFRHHRYI FDVKEDKQSG AKGKDGVAKE
301: RVKPRLQECG PRFTLKLVTL QHGTFDTKGG EFEWVHKPEM DTSRRRFFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.