Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70768 | Canola | plastid | 51.96 | 18.6 |
| CDY07134 | Canola | nucleus | 51.96 | 15.19 |
| CDY58227 | Canola | nucleus | 51.96 | 15.19 |
| GSMUA_Achr8P29700_001 | Banana | nucleus | 42.16 | 13.56 |
| Solyc11g066280.1.1 | Tomato | nucleus | 44.12 | 13.43 |
| AT4G01560.1 | Thale cress | nucleus | 45.1 | 13.41 |
| Zm00001d051801_P002 | Maize | golgi | 35.29 | 13.38 |
| GSMUA_Achr8P29710_001 | Banana | plastid | 44.12 | 13.04 |
| VIT_14s0036g01520.t01 | Wine grape | nucleus | 44.12 | 13.01 |
| VIT_07s0031g03160.t01 | Wine grape | nucleus | 44.12 | 13.01 |
| EER89152 | Sorghum | nucleus | 45.1 | 12.71 |
| PGSC0003DMT400001077 | Potato | cytosol | 44.12 | 12.68 |
| TraesCS4A01G375600.1 | Wheat | nucleus | 44.12 | 12.64 |
| TraesCS7A01G077100.1 | Wheat | nucleus | 44.12 | 12.64 |
| TraesCS7D01G072700.1 | Wheat | nucleus | 44.12 | 12.64 |
| GSMUA_Achr8P13740_001 | Banana | nucleus | 43.14 | 12.5 |
| Zm00001d011121_P001 | Maize | nucleus, plasma membrane | 43.14 | 12.22 |
| HORVU7Hr1G018900.26 | Barley | nucleus | 43.14 | 12.05 |
| KRH06320 | Soybean | nucleus | 42.16 | 11.85 |
| KRH47743 | Soybean | nucleus | 42.16 | 11.85 |
| Os06t0137500-02 | Rice | nucleus | 44.12 | 11.48 |
| CDY08321 | Canola | mitochondrion, nucleus | 24.51 | 8.5 |
| CDY71038 | Canola | mitochondrion, nucleus | 24.51 | 8.39 |
| CDY18814 | Canola | cytosol | 20.59 | 7.5 |
| TraesCS3B01G302100.1 | Wheat | nucleus | 20.59 | 3.91 |
Protein Annotations
| EnsemblPlants:CDY72499 | EnsemblPlantsGene:GSBRNA2T00030176001 | InterPro:Brix | InterPro:IPR007109 | PANTHER:PTHR22734 | PANTHER:PTHR22734:SF3 |
| PFscan:PS50833 | ProteinID:CDY72499 | ProteinID:CDY72499.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52954 |
| UniParc:UPI0004EF2604 | UniProt:A0A078K0N4 | MapMan:35.2 | : | : | : |
Description
BnaCnng77980DBnaCnng77980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0N4]
Coordinates
chrLK051418:+:1389..1776
Molecular Weight (calculated)
12161.1 Da
IEP (calculated)
11.468
GRAVY (calculated)
-0.066
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLVVSLRF FQSLFPQEPN FRGRRVVTFH NQRDFIFFRH HRYILDIKKD KQSGAKGKKG VAKERVKDAR LELVWVSRAL LIDPTLLGKF FFFLKSIFIQ
101: GY
101: GY
001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
Arabidopsis Description
MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.