CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027789.1-P	Field mustard	mitochondrion, nucleus	98.66	100.0
CDY08321	Canola	mitochondrion, nucleus	98.66	100.0
AT1G63780.1	Thale cress	mitochondrion, nucleus	82.55	83.67
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	43.96	78.44
Solyc01g007250.2.1	Tomato	nucleus	76.51	77.82
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	76.17	77.47
KRH29998	Soybean	nucleus	75.5	76.79
KRH62883	Soybean	endoplasmic reticulum	73.83	75.09
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	50.67	74.38
Os08t0155000-01	Rice	nucleus	70.81	72.01
HORVU7Hr1G071450.1	Barley	nucleus	70.13	71.33
TraesCS7D01G296800.1	Wheat	nucleus	69.8	70.99
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	69.8	70.99
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	76.85	70.68
Zm00001d014626_P002	Maize	plastid	69.46	70.65
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	69.46	70.65
EER90306	Sorghum	mitochondrion, nucleus	69.46	70.65
Solyc11g065980.1.1	Tomato	cytosol	60.74	66.79
EES14567	Sorghum	mitochondrion	63.42	64.51
KRH25985	Soybean	cytosol	14.77	43.14
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	16.78	33.33
CDY07134	Canola	nucleus	29.87	25.5
CDY58227	Canola	nucleus	29.53	25.21
CDY72499	Canola	mitochondrion	8.39	24.51
CDY18814	Canola	cytosol	17.79	18.93
CDY70768	Canola	plastid	16.78	17.54

Protein Annotations

EnsemblPlants:CDY71038	EnsemblPlantsGene:GSBRNA2T00010750001	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109	ncoils:Coil
PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	PFAM:PF04427	PFscan:PS50833	ProteinID:CDY71038	ProteinID:CDY71038.1
SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI0004EF1A02	UniProt:A0A078JTZ1	MapMan:17.1.3.2.1.1.2	:

Description

BnaA09g53020DBnaA09g53020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTZ1]

Coordinates

chrLK044232:-:754..2844

Molecular Weight (calculated)

34865.0 Da

IEP (calculated)

9.624

GRAVY (calculated)

-0.683

Length

298 amino acids

Sequence
(BLAST)

001: MLRRNVRLRK EYLYRKNLEG NEREIYEKKR KIREALQEGK PIPTELRNEE AKLRQEIDLE DQNTAVPRSH IDDEYANATE KEPKILLTTS RDPSAPLTRF
101: VKELNIVFPN ASKLNRGSQV ISEIIETARS HDFTDVIFVS ENRGKPDGLI ISHLPFGPTA YFQLLNVVTR HEIQTKKEMG KMSEQYPHLI FERFTTQACI
201: FMGKRVMNIL KHIFPVPKLD AKRIVTFSNE SDYISFRNHV YDKGEGGPKS IELKEIGPRF ELRLYQVKLG TLEQDEAEVE WVLRPYMNTA KKRKFLGE

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.