CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 2
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014626_P002	Maize	plastid	98.63	98.63
EES14567	Sorghum	mitochondrion	87.37	87.37
HORVU7Hr1G071450.1	Barley	nucleus	86.01	86.01
TraesCS7D01G296800.1	Wheat	nucleus	85.67	85.67
Os08t0155000-01	Rice	nucleus	85.67	85.67
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	85.32	85.32
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	85.32	85.32
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	78.84	78.84
Solyc01g007250.2.1	Tomato	nucleus	77.47	77.47
KRH29998	Soybean	nucleus	76.45	76.45
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	52.56	75.86
KRH62883	Soybean	endoplasmic reticulum	74.74	74.74
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	41.3	72.46
CDY08321	Canola	mitochondrion, nucleus	70.65	70.41
Bra027789.1-P	Field mustard	mitochondrion, nucleus	70.65	70.41
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	77.47	70.06
AT1G63780.1	Thale cress	mitochondrion, nucleus	69.97	69.73
CDY71038	Canola	mitochondrion, nucleus	70.65	69.46
Solyc11g065980.1.1	Tomato	cytosol	63.48	68.63
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	19.8	38.67
KRH25985	Soybean	cytosol	12.63	36.27
EER89152	Sorghum	nucleus	31.06	25.14

Protein Annotations

MapMan:17.1.3.2.1.1.2	Gene3D:3.40.50.10480	EntrezGene:8065136	InterPro:Brix	UniProt:C5Z8T9	EnsemblPlants:EER90306
ProteinID:EER90306	ProteinID:EER90306.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0032040
GO:GO:0034457	GO:GO:0042134	InterPro:IPR007109	PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR22734
PANTHER:PTHR22734:SF2	SMART:SM00879	EnsemblPlantsGene:SORBI_3010G247400	SUPFAM:SSF52954	unigene:Sbi.13164	UniParc:UPI0001A89768
RefSeq:XP_002438939.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:58744884..58748971

Molecular Weight (calculated)

33901.9 Da

IEP (calculated)

10.175

GRAVY (calculated)

-0.691

Length

293 amino acids

Sequence
(BLAST)

001: MLRRNIRQRR EYLYTKSLEG PQRALFEKKR RIRAALEEGK PIPTELRNEE HDLRRQIDLE DQERQVPKSI VDNEYATATV REPKILLTTS RNPSAPLTQF
101: VKELKVVFPN SQRMNRGGQV ISEIVESCRS HDITDLILVH EHRGQPDGLI VSHLPHGPTA YFGLLNVVTR HDIKDRKTMG KMSEAYPHLI LDNFSTQIGE
201: RTATILKHLF PVPKPDSKRI ITFANRDDYI SFRHHVYEKP GGPKSIDLKE VGPRFELRLY QIKLGTVEQN EAQSEFVLRP YINTAKKQKT LGA

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.