Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P00390_001 | Banana | mitochondrion, nucleus | 79.64 | 65.52 |
| Solyc01g007250.2.1 | Tomato | nucleus | 94.61 | 53.92 |
| VIT_13s0019g00850.t01 | Wine grape | mitochondrion, nucleus | 87.43 | 49.83 |
| PGSC0003DMT400042226 | Potato | mitochondrion, nucleus | 94.61 | 48.77 |
| KRH29998 | Soybean | nucleus | 82.04 | 46.76 |
| KRH62883 | Soybean | endoplasmic reticulum | 81.44 | 46.42 |
| Bra027789.1-P | Field mustard | mitochondrion, nucleus | 78.44 | 44.56 |
| CDY08321 | Canola | mitochondrion, nucleus | 78.44 | 44.56 |
| CDY71038 | Canola | mitochondrion, nucleus | 78.44 | 43.96 |
| HORVU7Hr1G071450.1 | Barley | nucleus | 76.05 | 43.34 |
| TraesCS7A01G301400.1 | Wheat | mitochondrion, nucleus | 76.05 | 43.34 |
| TraesCS7B01G201700.1 | Wheat | mitochondrion, nucleus | 76.05 | 43.34 |
| TraesCS7D01G296800.1 | Wheat | nucleus | 76.05 | 43.34 |
| Os08t0155000-01 | Rice | nucleus | 75.45 | 43.0 |
| AT1G63780.1 | Thale cress | mitochondrion, nucleus | 74.85 | 42.52 |
| EER90306 | Sorghum | mitochondrion, nucleus | 72.46 | 41.3 |
| Zm00001d014626_P002 | Maize | plastid | 72.46 | 41.3 |
| EES14567 | Sorghum | mitochondrion | 66.47 | 37.88 |
| Solyc11g065980.1.1 | Tomato | cytosol | 58.68 | 36.16 |
| KRH25985 | Soybean | cytosol | 21.56 | 35.29 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane, plastid | 12.57 | 14.0 |
| PGSC0003DMT400001077 | Potato | cytosol | 26.35 | 12.39 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001044 | EnsemblPlantsGene:PGSC0003DMG400000394 | Gene3D:3.40.50.10480 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Brix | InterPro:IPR007109 | ncoils:Coil | PANTHER:PTHR22734 | PANTHER:PTHR22734:SF2 | PFscan:PS50833 |
| PGSC:PGSC0003DMG400000394 | SUPFAM:SSF52954 | UniParc:UPI000294B02B | UniProt:M0ZHS7 | MapMan:35.2 | : |
Description
U3 small nucleolar ribonucleoprotein protein imp4 [Source:PGSC_GENE;Acc:PGSC0003DMG400000394]
Coordinates
chr11:+:38546284..38552640
Molecular Weight (calculated)
19428.5 Da
IEP (calculated)
7.576
GRAVY (calculated)
-0.595
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRRNIRLRR EYLYRKSLEG KERLLYEKKR KIREALEEGK PIPTELRNEE AALRKEIDLE DEITAVPRST IDDEYANAPE KDPKILLTTS RNPSAPLTQF
101: VKELKIVFPN AQRMNRGGQV ISEIIETCRS HDFTDVILVH ENRGVPDGIV ISHLPLVQLL TLDCSMW
101: VKELKIVFPN AQRMNRGGQV ISEIIETCRS HDFTDVILVH ENRGVPDGIV ISHLPLVQLL TLDCSMW
001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE
Arabidopsis Description
IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.