Factsheet for VIT_13s0019g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 2
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007250.2.1	Tomato	nucleus	90.78	90.78
KRH29998	Soybean	nucleus	89.42	89.42
KRH62883	Soybean	endoplasmic reticulum	88.05	88.05
PGSC0003DMT400001044	Potato	mitochondrion, nucleus	49.83	87.43
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	59.73	86.21
Os08t0155000-01	Rice	nucleus	81.91	81.91
PGSC0003DMT400042226	Potato	mitochondrion, nucleus	90.1	81.48
TraesCS7B01G201700.1	Wheat	mitochondrion, nucleus	80.89	80.89
HORVU7Hr1G071450.1	Barley	nucleus	80.89	80.89
TraesCS7D01G296800.1	Wheat	nucleus	80.55	80.55
TraesCS7A01G301400.1	Wheat	mitochondrion, nucleus	80.2	80.2
AT1G63780.1	Thale cress	mitochondrion, nucleus	79.52	79.25
Zm00001d014626_P002	Maize	plastid	78.84	78.84
EER90306	Sorghum	mitochondrion, nucleus	78.84	78.84
Solyc11g065980.1.1	Tomato	cytosol	72.35	78.23
CDY08321	Canola	mitochondrion, nucleus	77.47	77.21
Bra027789.1-P	Field mustard	mitochondrion, nucleus	77.47	77.21
CDY71038	Canola	mitochondrion, nucleus	77.47	76.17
EES14567	Sorghum	mitochondrion	72.01	72.01
KRH25985	Soybean	cytosol	15.36	44.12
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	20.14	39.33
VIT_07s0031g03160.t01	Wine grape	nucleus	33.45	28.32
VIT_14s0036g01520.t01	Wine grape	nucleus	33.11	28.03

Protein Annotations

EntrezGene:100248284	wikigene:100248284	MapMan:17.1.3.2.1.1.2	Gene3D:3.40.50.10480	UniProt:A5B6W8	EMBL:AM448761
InterPro:Brix	ProteinID:CAN61017	ProteinID:CAN61017.1	ProteinID:CBI17728	ProteinID:CBI17728.3	ncoils:Coil
EMBL:FN594963	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034457
GO:GO:0042134	InterPro:IPR007109	EntrezGene:LOC100248284	wikigene:LOC100248284	PFAM:PF04427	PFscan:PS50833
PANTHER:PTHR22734	PANTHER:PTHR22734:SF2	SMART:SM00879	SUPFAM:SSF52954	UniParc:UPI000152031F	ArrayExpress:VIT_13s0019g00850
EnsemblPlantsGene:VIT_13s0019g00850	EnsemblPlants:VIT_13s0019g00850.t01	RefSeq:XP_002265279	RefSeq:XP_002265279.1	RefSeq:XP_010645678.1	RefSeq:XP_010645679.1
RefSeq:XP_010645680.1	:	:	:	:	:

Description

No Description!

Coordinates

chr13_random:+:2688559..2693952

Molecular Weight (calculated)

34073.2 Da

IEP (calculated)

10.001

GRAVY (calculated)

-0.648

Length

293 amino acids

Sequence
(BLAST)

001: MLRRNIRLRR EYIYRKSLEG KERLLYEKKR KIKEALEEGK PIPTELRNEE AALRQEIDLE DEQTAVPRSH IDDEYANATE KDPKILLTTS RNPSAPLTQF
101: VKELKFVFPN AQRMNRGGQV ISEIIETCRA HDFTDVVLVH EHRGVPDGII ISHLPFGPTA YFGLLNVVTR HDIKDKKAIG KMSEAYPHLI LNNFSTKLGE
201: RTANILKHLF PVPKPDTKRI ITFANQSDYV SFRHHVYEKR GGPKSIELKE VGPRFELRLY QIKLGTMDQS EAQIEWVIRP YMNTTKKRKF LGD

Best Arabidopsis Sequence Match ( AT1G63780.1 )
(BLAST)

001: MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF
101: TKELKFVFPN SQRINRGSQV ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG KMPEQYPHLI FNNFTTQMGQ
201: RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

Arabidopsis Description

IMP4IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.