Factsheet for VIT_07s0031g03160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0036g01520.t01	Wine grape	nucleus	96.53	96.53
Solyc11g066280.1.1	Tomato	nucleus	77.75	80.3
KRH47743	Soybean	nucleus	82.08	78.24
AT4G01560.1	Thale cress	nucleus	76.59	77.26
KRH06320	Soybean	nucleus	80.92	77.14
PGSC0003DMT400001077	Potato	cytosol	78.9	76.9
CDY07134	Canola	nucleus	76.01	75.36
CDY58227	Canola	nucleus	75.72	75.07
Bra036325.1-P	Field mustard	nucleus	75.72	74.86
GSMUA_Achr8P29700_001	Banana	nucleus	65.9	71.92
Zm00001d011121_P001	Maize	nucleus, plasma membrane	71.97	69.17
EER89152	Sorghum	nucleus	71.1	67.96
TraesCS4A01G375600.1	Wheat	nucleus	68.5	66.57
TraesCS7A01G077100.1	Wheat	nucleus	68.5	66.57
GSMUA_Achr8P29710_001	Banana	plastid	66.19	66.38
TraesCS7D01G072700.1	Wheat	nucleus	68.21	66.29
HORVU7Hr1G018900.26	Barley	nucleus	67.05	63.56
GSMUA_Achr8P13740_001	Banana	nucleus	63.29	62.22
Os06t0137500-02	Rice	nucleus	67.34	59.44
CDY72499	Canola	mitochondrion	13.01	44.12
CDY70768	Canola	plastid	34.1	41.4
VIT_13s0019g00850.t01	Wine grape	mitochondrion, nucleus	28.32	33.45
Zm00001d051801_P002	Maize	golgi	21.1	27.14
CDY18814	Canola	cytosol	21.68	26.79
TraesCS3B01G302100.1	Wheat	nucleus	30.64	19.74

Protein Annotations

EntrezGene:100266185	wikigene:100266185	MapMan:17.1.2.2.1.4	Gene3D:3.40.50.10480	InterPro:Brix	ProteinID:CCB47182
ProteinID:CCB47182.1	ncoils:Coil	UniProt:F6H4J0	EMBL:FN595233	GO:GO:0000027	GO:GO:0000460
GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030687	GO:GO:0042134	InterPro:IPR007109
EntrezGene:LOC100266185	wikigene:LOC100266185	PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3
SMART:SM00879	SUPFAM:SSF52954	TIGR:TC64320	UniParc:UPI000210A092	ArrayExpress:VIT_07s0031g03160	EnsemblPlantsGene:VIT_07s0031g03160
EnsemblPlants:VIT_07s0031g03160.t01	RefSeq:XP_002268541	RefSeq:XP_002268541.2	RefSeq:XP_010652998.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:19975088..19986702

Molecular Weight (calculated)

39554.6 Da

IEP (calculated)

10.544

GRAVY (calculated)

-0.832

Length

346 amino acids

Sequence
(BLAST)

001: MGAKRKKTEE VGGDDEVGGG KKQILPSMIK NKEKRSAVHA KLKHQKKIEK RKKAKAREAA EKRALELGEE PPAKKIPHTI ENTREFDETV CKPDDEELFA
101: GNDADEFSSI LNRKSDPKIL ITTCRFNSTR GPAFISELLS VIPNAHYYKR GTYDLKKIVE YAKKKDFTSL IVVHTNRREP DALLIIGLPD GPTAHFKLSK
201: LVLRKDVKNH GNPTSHIPEL VLNNFTTRLG HRIGRMIQSL FPQAPNFGGR RVVTFHNQRD FIFFRHHRYI FESKESKQGD SKGNKDKDAK GEKSSRGKVV
301: ARLQECGPRF TLKLISLQHG TFDTKGGEYE WVHKPEMDTS RRRFFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.