CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47743	Soybean	nucleus	95.87	95.87
VIT_07s0031g03160.t01	Wine grape	nucleus	77.14	80.92
Solyc11g066280.1.1	Tomato	nucleus	73.83	80.0
VIT_14s0036g01520.t01	Wine grape	nucleus	75.76	79.48
PGSC0003DMT400001077	Potato	cytosol	75.76	77.46
AT4G01560.1	Thale cress	nucleus	70.52	74.64
GSMUA_Achr8P29700_001	Banana	nucleus	63.36	72.56
CDY07134	Canola	nucleus	69.7	72.49
CDY58227	Canola	nucleus	69.7	72.49
Bra036325.1-P	Field mustard	nucleus	69.7	72.29
Zm00001d011121_P001	Maize	nucleus, plasma membrane	69.42	70.0
EER89152	Sorghum	nucleus	69.42	69.61
TraesCS4A01G375600.1	Wheat	nucleus	68.04	69.38
TraesCS7A01G077100.1	Wheat	nucleus	68.04	69.38
TraesCS7D01G072700.1	Wheat	nucleus	67.77	69.1
GSMUA_Achr8P29710_001	Banana	plastid	64.19	67.54
HORVU7Hr1G018900.26	Barley	nucleus	66.12	65.75
GSMUA_Achr8P13740_001	Banana	nucleus	61.71	63.64
Os06t0137500-02	Rice	nucleus	65.01	60.2
CDY72499	Canola	mitochondrion	11.85	42.16
CDY70768	Canola	plastid	31.41	40.0
KRH29998	Soybean	nucleus	25.9	32.08
KRH62883	Soybean	endoplasmic reticulum	25.34	31.4
Zm00001d051801_P002	Maize	golgi	20.11	27.14
CDY18814	Canola	cytosol	20.39	26.43
KRH25985	Soybean	cytosol	7.16	25.49
TraesCS3B01G302100.1	Wheat	nucleus	29.48	19.93
KRG94166	Soybean	plastid	10.47	14.34

Protein Annotations

EntrezGene:100791194	MapMan:17.1.2.2.1.4	Gene3D:3.40.50.10480	EMBL:ACUP02009825	InterPro:Brix	EnsemblPlantsGene:GLYMA_16G016200
GO:GO:0000027	GO:GO:0000460	GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030687
GO:GO:0042134	UniProt:I1MK96	InterPro:IPR007109	EnsemblPlants:KRH06320	ProteinID:KRH06320	ProteinID:KRH06320.1
PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	SMART:SM00879	SUPFAM:SSF52954
UniParc:UPI00023D7148	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:1409241..1413726

Molecular Weight (calculated)

41979.3 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.982

Length

363 amino acids

Sequence
(BLAST)

001: MGGKRRKSDD DDDVEAEASA SGWKKKTRTT EKEEKEKKEP LRPSMIKNKE KRSELHAKLK QQKKLDKRAK AKARDAALKR ALDLGEEPPE KKVPRTIENT
101: RELDETVCKP DDDELFAGND ADEFGSILNQ QQTPKILITT CRFHSTRGPA FISELLSVIP NAHYFKRGTY DLKKIVEYAK KKDFTSVIVV HTNRREPDAL
201: LIIGVPDGPT AHFKLSKLVL RKDIKNHGNP TGHKPELVLN NFTTRLGHRV GRLIQSLFPQ DPEFKGRRVV TFHNQRDFIF FRHHRYIFET KEVKKTESKG
301: KKDKEGKSEN VPEQKTIARL QECGPRFTLK LISLQHGTFD TKGGEYEWVH KPEMDTSRRR FFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.