Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G375600.1 | Wheat | nucleus | 21.23 | 32.02 |
| TraesCS7A01G077100.1 | Wheat | nucleus | 21.23 | 32.02 |
| TraesCS7D01G072700.1 | Wheat | nucleus | 21.04 | 31.74 |
| HORVU7Hr1G018900.26 | Barley | nucleus | 20.86 | 30.68 |
| VIT_07s0031g03160.t01 | Wine grape | nucleus | 19.74 | 30.64 |
| Solyc11g066280.1.1 | Tomato | nucleus | 18.99 | 30.45 |
| CDY58227 | Canola | nucleus | 19.74 | 30.37 |
| CDY07134 | Canola | nucleus | 19.74 | 30.37 |
| VIT_14s0036g01520.t01 | Wine grape | nucleus | 19.55 | 30.35 |
| Bra036325.1-P | Field mustard | nucleus | 19.74 | 30.29 |
| Zm00001d011121_P001 | Maize | nucleus, plasma membrane | 20.3 | 30.28 |
| PGSC0003DMT400001077 | Potato | cytosol | 19.93 | 30.14 |
| KRH47743 | Soybean | nucleus | 20.11 | 29.75 |
| AT4G01560.1 | Thale cress | nucleus | 18.99 | 29.74 |
| GSMUA_Achr8P29700_001 | Banana | nucleus | 17.5 | 29.65 |
| EER89152 | Sorghum | nucleus | 19.93 | 29.56 |
| KRH06320 | Soybean | nucleus | 19.93 | 29.48 |
| GSMUA_Achr8P29710_001 | Banana | plastid | 18.06 | 28.12 |
| Os06t0137500-02 | Rice | nucleus | 20.3 | 27.81 |
| GSMUA_Achr8P13740_001 | Banana | nucleus | 17.5 | 26.7 |
| CDY70768 | Canola | plastid | 11.92 | 22.46 |
| CDY72499 | Canola | mitochondrion | 3.91 | 20.59 |
| TraesCS7B01G201700.1 | Wheat | mitochondrion, nucleus | 10.61 | 19.45 |
| Zm00001d051801_P002 | Maize | golgi | 9.31 | 18.59 |
| CDY18814 | Canola | cytosol | 9.12 | 17.5 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G302100.1 | EnsemblPlantsGene:TraesCS3B01G302100 | InterPro:Brix | InterPro:IPR007109 | PANTHER:PTHR22734 | PFAM:PF04427 |
| PFscan:PS50833 | SEG:seg | SMART:SM00879 | SUPFAM:SSF52954 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3B:+:485689559..485693042
Molecular Weight (calculated)
60506.1 Da
IEP (calculated)
10.147
GRAVY (calculated)
-0.949
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRERSTGKK RSGTKRNQGG SRGNEEEKPV PGAKEEKLPP KLSTDALFPG DKGEIRAMEG KKPTPQMVFM AEKEETVNNE SGVWKRNQST DVASPGDSGG
101: ITRRDGKGVK EKKPAAKTHN NDSRAKRHQG GSRGEEEKPV PVAKGKKLPP KHSTYALFPV DKGESRGGEG EKPAPQMVLT AKQEEVVNAE AGKKRKQSPE
201: EDEGQSRGVK PLGTRHMEKL EAEIQVLPEE VVNTKAGKKR KQSPEEDEGQ SRGAKSLGTR HMEKSEAEIQ VLPKGDNVDG KEKKKKGKRI RRSKLKKDRL
301: ITRAAQRNMF GSALKDEFPV LKDGSKPKVL ITACQYIMDK QGPSSSFIHE LMQLIPDACY IHRTNVCLDE VVEYANERKF TSLIVALSDG LKIINLPDGP
401: LAHLELSEFT PRKDIKNHGE PISREPELVF NNFEAHLGYR LQRLISSLFP QADFNKRQVF TFELKQQHIL FRNHSIENSE DQNSVVQVCI VNANLWSYEM
501: ALRARNYIDP LHDEARLRNT RKWEWVWFYT LPRTVGG
101: ITRRDGKGVK EKKPAAKTHN NDSRAKRHQG GSRGEEEKPV PVAKGKKLPP KHSTYALFPV DKGESRGGEG EKPAPQMVLT AKQEEVVNAE AGKKRKQSPE
201: EDEGQSRGVK PLGTRHMEKL EAEIQVLPEE VVNTKAGKKR KQSPEEDEGQ SRGAKSLGTR HMEKSEAEIQ VLPKGDNVDG KEKKKKGKRI RRSKLKKDRL
301: ITRAAQRNMF GSALKDEFPV LKDGSKPKVL ITACQYIMDK QGPSSSFIHE LMQLIPDACY IHRTNVCLDE VVEYANERKF TSLIVALSDG LKIINLPDGP
401: LAHLELSEFT PRKDIKNHGE PISREPELVF NNFEAHLGYR LQRLISSLFP QADFNKRQVF TFELKQQHIL FRNHSIENSE DQNSVVQVCI VNANLWSYEM
501: ALRARNYIDP LHDEARLRNT RKWEWVWFYT LPRTVGG
001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
Arabidopsis Description
MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.