Factsheet for GSMUA_Achr8P29710_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29700_001	Banana	nucleus	78.26	85.17
GSMUA_Achr8P13740_001	Banana	nucleus	75.94	74.43
Solyc11g066280.1.1	Tomato	nucleus	64.93	66.87
VIT_14s0036g01520.t01	Wine grape	nucleus	66.38	66.19
VIT_07s0031g03160.t01	Wine grape	nucleus	66.38	66.19
EER89152	Sorghum	nucleus	67.83	64.64
TraesCS7A01G077100.1	Wheat	nucleus	66.67	64.61
TraesCS4A01G375600.1	Wheat	nucleus	66.67	64.61
Zm00001d011121_P001	Maize	nucleus, plasma membrane	67.25	64.44
TraesCS7D01G072700.1	Wheat	nucleus	66.38	64.33
KRH47743	Soybean	nucleus	67.54	64.19
KRH06320	Soybean	nucleus	67.54	64.19
PGSC0003DMT400001077	Potato	cytosol	65.51	63.66
AT4G01560.1	Thale cress	nucleus	62.61	62.97
CDY07134	Canola	nucleus	62.9	62.18
CDY58227	Canola	nucleus	62.61	61.89
Bra036325.1-P	Field mustard	nucleus	62.61	61.71
HORVU7Hr1G018900.26	Barley	nucleus	64.93	61.37
Os06t0137500-02	Rice	nucleus	65.22	57.4
CDY72499	Canola	mitochondrion	13.04	44.12
CDY70768	Canola	plastid	31.3	37.89
GSMUA_Achr9P00390_001	Banana	mitochondrion, nucleus	16.52	28.08
CDY18814	Canola	cytosol	20.58	25.36
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane, plastid	9.28	21.33
TraesCS3B01G302100.1	Wheat	nucleus	28.12	18.06

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29710_001	EnsemblPlants:GSMUA_Achr8T29710_001	EnsemblPlantsGene:GSMUA_Achr8G29710_001	Gene3D:3.40.50.10480	InterPro:Brix	InterPro:IPR007109
PANTHER:PTHR22734	PANTHER:PTHR22734:SF3	PFAM:PF04427	PFscan:PS50833	SEG:seg	SMART:SM00879
SUPFAM:SSF52954	UniParc:UPI000295F4C5	UniProt:M0TUS3	MapMan:17.1.2.2.1.4	:	:

Description

Brix domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G29710_001]

Coordinates

chr8:+:32019274..32026669

Molecular Weight (calculated)

40375.4 Da

IEP (calculated)

10.310

GRAVY (calculated)

-0.792

Length

345 amino acids

Sequence
(BLAST)

001: MGTLLQTCQT TFVIDFNCSR FFPHCMWRVR SSVGRISLHQ EIRCDVDEQE TRDKKKKGTT LPSMIKNKEK RSAPPEKKVP RTIENTREVD ETVCRPDDEE
101: LFAGNDADEF SQVLKQEVTP KILITTNRFN STRGPAFIQE LLSVIPNAHY HKRGTYELKK IVEYAKNKDF TSVVVVHSNR REPDALLIIN LPDGPTAHFK
201: LSKLVLRKDI KNHGNPTDHK PELVLNNFTT RLGHRVGRMI QSLFPQDPNF RGRRVVTFHN QRDFIFFRHH RYIFESKEKK DDSKDKAAKS KNITQEKVIV
301: RLQECGPRFT LKLRNLQHGT FDSKGGEYEW VHKPEMDTSR RRFFL

Best Arabidopsis Sequence Match ( AT4G01560.1 )
(BLAST)

001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

Arabidopsis Description

MEE49AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.