Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000333.1-P | Field mustard | nucleus | 79.67 | 83.06 |
| CDX95575 | Canola | nucleus | 79.6 | 82.79 |
| KRH51310 | Soybean | cytosol | 54.97 | 67.12 |
| KRH01856 | Soybean | cytosol | 25.37 | 66.28 |
| VIT_05s0094g01330.t01 | Wine grape | cytosol | 49.78 | 64.77 |
| Solyc12g019080.1.1 | Tomato | nucleus | 49.26 | 62.46 |
| KRH01854 | Soybean | cytosol | 28.56 | 62.2 |
| AT1G05630.1 | Thale cress | cytosol | 53.49 | 61.62 |
| Solyc08g014580.2.1 | Tomato | nucleus | 52.74 | 61.4 |
| PGSC0003DMT400064953 | Potato | cytosol | 52.67 | 61.0 |
| PGSC0003DMT400052499 | Potato | nucleus | 52.0 | 60.85 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 45.03 | 59.45 |
| AT2G31830.2 | Thale cress | cytosol | 50.52 | 58.06 |
| GSMUA_Achr5P25380_001 | Banana | cytosol, nucleus, peroxisome | 27.89 | 56.71 |
| Os09t0500300-01 | Rice | cytosol | 40.43 | 54.45 |
| Solyc12g096660.1.1 | Tomato | cytosol | 47.4 | 53.61 |
| AT1G65580.1 | Thale cress | nucleus | 43.77 | 53.59 |
| Zm00001d002647_P001 | Maize | cytosol, endoplasmic reticulum, plastid | 16.39 | 53.38 |
| Zm00001d028271_P001 | Maize | cytosol | 11.2 | 53.36 |
| GSMUA_Achr11P... | Banana | cytosol | 44.96 | 52.6 |
| EES15333 | Sorghum | cytosol | 44.29 | 52.14 |
| GSMUA_Achr5P25370_001 | Banana | extracellular, vacuole | 17.73 | 51.84 |
| Os08t0524100-01 | Rice | nucleus | 42.51 | 51.76 |
| Zm00001d021014_P001 | Maize | cytosol | 44.73 | 51.1 |
| Zm00001d006063_P002 | Maize | cytosol | 44.73 | 50.84 |
| Zm00001d031554_P003 | Maize | nucleus | 41.99 | 50.67 |
| KXG35959 | Sorghum | cytosol | 44.44 | 50.42 |
| Zm00001d049785_P003 | Maize | cytosol | 41.99 | 49.91 |
| TraesCS7A01G255500.2 | Wheat | cytosol | 42.8 | 49.74 |
| TraesCS5A01G278100.1 | Wheat | nucleus | 43.62 | 49.66 |
| TraesCS7B01G151900.2 | Wheat | nucleus | 42.51 | 49.61 |
| HORVU7Hr1G052740.2 | Barley | cytosol | 42.43 | 49.4 |
| TraesCS5B01G277500.1 | Wheat | nucleus | 43.4 | 49.33 |
| TraesCS7D01G253900.2 | Wheat | nucleus | 42.14 | 49.05 |
| TraesCS5D01G285100.2 | Wheat | nucleus | 43.77 | 48.4 |
| HORVU5Hr1G075330.2 | Barley | mitochondrion, plastid | 43.69 | 46.82 |
| AT1G47510.1 | Thale cress | nucleus, plastid | 7.64 | 30.84 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:27.5.4.2 | Gene3D:3.60.10.10 | EntrezGene:818994 | UniProt:A0A1P8AX44 | ProteinID:ANM61202.1 |
| ArrayExpress:AT2G43900 | EnsemblPlantsGene:AT2G43900 | RefSeq:AT2G43900 | TAIR:AT2G43900 | RefSeq:AT2G43900-TAIR-G | EnsemblPlants:AT2G43900.2 |
| Unigene:At.36825 | ncoils:Coil | InterPro:Endo/exonu/phosph_ase_sf | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0004527 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046856 | GO:GO:0090305 |
| InterPro:IPPc | InterPro:IPR000535 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR036691 | InterPro:MSP_dom |
| RefSeq:NP_001323432.1 | PFscan:PS50202 | PANTHER:PTHR11200 | PANTHER:PTHR11200:SF137 | SMART:SM00128 | SMART:SM00320 |
| SUPFAM:SSF50978 | SUPFAM:SSF56219 | UniParc:UPI000849506B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
Endonuclease/exonuclease/phosphatase family protein [Source:TAIR;Acc:AT2G43900]
Coordinates
chr2:-:18178588..18184089
Molecular Weight (calculated)
148511.0 Da
IEP (calculated)
7.453
GRAVY (calculated)
-0.668
Length
1348 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDIINNNHRD ENDDDEEEAL SAMSSVPPPR KIHSYSHQLR ATGQKGHHRQ RQHSLDDIPK ITEIVSGCGI SGDSSDDEFY PYATTTNSSS FPFTGGDTGD
0101: SDDYLHQPEI GEDFQPLPEF VGSGGGVGMF KVPTRSPLHS ARPPCLELRP HPLKETQVGR FLRNIACTET QLWAGQESGV RFWNFDDAFE PGCGLSGRVQ
0201: RGDEDAAPFQ ESASTSPTTC LMVDNGNRLV WSGHKDGKIR SWKMDYVLDD GDDSPFKEGL AWQAHKGPVN SVIMSSYGDL WSCSEGGVIK IWTWESMEKS
0301: LSLRLEEKHM AALLVERSGI DLRAQVTVNG TCNISSSEVK CLLADNVRSK VWAAQLQTFS LWDGRTKELL KVFNSEGQTE NRVDMPLGQD QPAAEDEMKA
0401: KIASTSKKEK PHGFLQRSRN AIMGAADAVR RVATRGGGAY EDAKRTEAMV LAGDGMIWTG CTNGLLIQWD GNGNRLQDFR HHQCAVLCFC TFGERIYIGY
0501: VSGHIQIIDL EGNLIAGWVA HNNAVIKMAA ADGYIFSLAT HGGIRGWPVI SPGPLDGIIR SELAEKERTY AQTDSVRILT GSWNVGQGKA SHDALMSWLG
0601: SVASDVGILV VGLQEVEMGA GFLAMSAAKE SVGGNEGSTI GQYWIDTIGK TLDEKAVFER MGSRQLAGLL ISLWVRKNLR THVGDIDVAA VPCGFGRAIG
0701: NKGGVGLRIR VFDRIMCFIN CHLAAHLEAV NRRNADFDHI YKTMSFTRSS NAHNAPAAGV STGSHTTKSA NNANVNTEET KQDLAEADMV VFFGDFNYRL
0801: FGISYDEARD FVSQRSFDWL REKDQLRAEM KAGRVFQGMR EAIITFPPTY KFERHRPGLG GYDSGEKKRI PAWCDRVIFR DTRTSPESEC SLDCPVVASI
0901: MLYDACMDVT ESDHKPVRCK FHVKIEHVDR SVRRQEFGRI IKTNEKVRAL LNDLRYVPET IVSSNSIVLQ NQDTFVLRIT NKCVKENAVF RILCEGQSTV
1001: REDEDTLELH PLGSFGFPRW LEVSKLKRSI LSHNSLKTRL VMMTRSSSFF LFFQVMPAAG TIKPDSSVEV SVHHEEFHTL EEFVDGIPQN WWCEDTRDKE
1101: AILVVNVQGG CSTETVCHRV HVRHCFSAKN LRIDSNPSNS KSQSLKKNEG DSNSKSSKKS DGDSNSKSSK KSDGDSNSKS SKKSDGDSNS KSSKKSDGDS
1201: NSKSSKKSDG DSNSKSSKKS DGDSNSKSSK KSDGDSCSKS QKKSDGDTNS KSQKKGDGDS SSKSHKKNDG DSSSKSHKKN DGDSSSKSHK KSDGDSSSKS
1301: HKKSEGDSSS KSHKKNDGDS SSSYKSQSGK KNSNSSTVEE SRNNHNKR
0101: SDDYLHQPEI GEDFQPLPEF VGSGGGVGMF KVPTRSPLHS ARPPCLELRP HPLKETQVGR FLRNIACTET QLWAGQESGV RFWNFDDAFE PGCGLSGRVQ
0201: RGDEDAAPFQ ESASTSPTTC LMVDNGNRLV WSGHKDGKIR SWKMDYVLDD GDDSPFKEGL AWQAHKGPVN SVIMSSYGDL WSCSEGGVIK IWTWESMEKS
0301: LSLRLEEKHM AALLVERSGI DLRAQVTVNG TCNISSSEVK CLLADNVRSK VWAAQLQTFS LWDGRTKELL KVFNSEGQTE NRVDMPLGQD QPAAEDEMKA
0401: KIASTSKKEK PHGFLQRSRN AIMGAADAVR RVATRGGGAY EDAKRTEAMV LAGDGMIWTG CTNGLLIQWD GNGNRLQDFR HHQCAVLCFC TFGERIYIGY
0501: VSGHIQIIDL EGNLIAGWVA HNNAVIKMAA ADGYIFSLAT HGGIRGWPVI SPGPLDGIIR SELAEKERTY AQTDSVRILT GSWNVGQGKA SHDALMSWLG
0601: SVASDVGILV VGLQEVEMGA GFLAMSAAKE SVGGNEGSTI GQYWIDTIGK TLDEKAVFER MGSRQLAGLL ISLWVRKNLR THVGDIDVAA VPCGFGRAIG
0701: NKGGVGLRIR VFDRIMCFIN CHLAAHLEAV NRRNADFDHI YKTMSFTRSS NAHNAPAAGV STGSHTTKSA NNANVNTEET KQDLAEADMV VFFGDFNYRL
0801: FGISYDEARD FVSQRSFDWL REKDQLRAEM KAGRVFQGMR EAIITFPPTY KFERHRPGLG GYDSGEKKRI PAWCDRVIFR DTRTSPESEC SLDCPVVASI
0901: MLYDACMDVT ESDHKPVRCK FHVKIEHVDR SVRRQEFGRI IKTNEKVRAL LNDLRYVPET IVSSNSIVLQ NQDTFVLRIT NKCVKENAVF RILCEGQSTV
1001: REDEDTLELH PLGSFGFPRW LEVSKLKRSI LSHNSLKTRL VMMTRSSSFF LFFQVMPAAG TIKPDSSVEV SVHHEEFHTL EEFVDGIPQN WWCEDTRDKE
1101: AILVVNVQGG CSTETVCHRV HVRHCFSAKN LRIDSNPSNS KSQSLKKNEG DSNSKSSKKS DGDSNSKSSK KSDGDSNSKS SKKSDGDSNS KSSKKSDGDS
1201: NSKSSKKSDG DSNSKSSKKS DGDSNSKSSK KSDGDSCSKS QKKSDGDTNS KSQKKGDGDS SSKSHKKNDG DSSSKSHKKN DGDSSSKSHK KSDGDSSSKS
1301: HKKSEGDSSS KSHKKNDGDS SSSYKSQSGK KNSNSSTVEE SRNNHNKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.