Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064953 | Potato | cytosol | 89.03 | 88.57 |
| Solyc12g019080.1.1 | Tomato | nucleus | 66.41 | 72.34 |
| VIT_05s0094g01330.t01 | Wine grape | cytosol | 58.38 | 65.25 |
| KRH51310 | Soybean | cytosol | 61.74 | 64.76 |
| KRH01854 | Soybean | cytosol | 34.54 | 64.62 |
| CDY47263 | Canola | plastid | 52.68 | 63.94 |
| Bra015445.1-P | Field mustard | plastid | 52.59 | 63.9 |
| Solyc12g096660.1.1 | Tomato | cytosol | 63.82 | 62.0 |
| CDY10014 | Canola | cytosol, plastid | 56.82 | 60.76 |
| CDY10132 | Canola | cytosol | 58.55 | 60.59 |
| KRH01856 | Soybean | cytosol | 26.86 | 60.27 |
| CDY15548 | Canola | cytosol | 57.08 | 60.15 |
| Bra030617.1-P | Field mustard | cytosol | 58.98 | 60.02 |
| Bra032456.1-P | Field mustard | cytosol | 57.94 | 59.86 |
| CDX86567 | Canola | cytosol | 56.39 | 59.69 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 52.5 | 59.55 |
| AT1G05630.1 | Thale cress | cytosol | 59.07 | 58.46 |
| CDY06178 | Canola | cytosol | 57.17 | 57.92 |
| GSMUA_Achr5P25380_001 | Banana | cytosol, nucleus, peroxisome | 32.64 | 57.01 |
| CDY34516 | Canola | cytosol | 54.66 | 56.02 |
| CDY42072 | Canola | cytosol | 54.84 | 55.46 |
| Bra005638.1-P | Field mustard | cytosol | 54.66 | 55.24 |
| Os09t0500300-01 | Rice | cytosol | 47.5 | 54.95 |
| AT2G31830.2 | Thale cress | cytosol | 55.53 | 54.82 |
| Bra000333.1-P | Field mustard | nucleus | 60.71 | 54.37 |
| Solyc11g008800.1.1 | Tomato | cytosol | 54.23 | 54.28 |
| CDX95575 | Canola | nucleus | 60.54 | 54.09 |
| Zm00001d028271_P001 | Maize | cytosol | 13.13 | 53.71 |
| GSMUA_Achr5P25370_001 | Banana | extracellular, vacuole | 21.07 | 52.93 |
| Zm00001d002647_P001 | Maize | cytosol, endoplasmic reticulum, plastid | 18.91 | 52.9 |
| GSMUA_Achr11P... | Banana | cytosol | 52.59 | 52.86 |
| AT2G43900.2 | Thale cress | nucleus | 61.4 | 52.74 |
| Os08t0524100-01 | Rice | nucleus | 48.96 | 51.22 |
| Zm00001d006063_P002 | Maize | cytosol | 52.16 | 50.93 |
| Zm00001d021014_P001 | Maize | cytosol | 51.81 | 50.85 |
| TraesCS5A01G278100.1 | Wheat | nucleus | 51.81 | 50.68 |
| KXG35959 | Sorghum | cytosol | 51.99 | 50.67 |
| EES15333 | Sorghum | cytosol | 49.83 | 50.39 |
| TraesCS7A01G255500.2 | Wheat | cytosol | 50.26 | 50.17 |
| TraesCS7B01G151900.2 | Wheat | nucleus | 50.0 | 50.13 |
| TraesCS5B01G277500.1 | Wheat | nucleus | 51.3 | 50.08 |
| TraesCS7D01G253900.2 | Wheat | nucleus | 49.91 | 49.91 |
| HORVU7Hr1G052740.2 | Barley | cytosol | 49.91 | 49.91 |
| Zm00001d031554_P003 | Maize | nucleus | 47.75 | 49.51 |
| Zm00001d049785_P003 | Maize | cytosol | 48.36 | 49.38 |
| TraesCS5D01G285100.2 | Wheat | nucleus | 51.64 | 49.06 |
| HORVU5Hr1G075330.2 | Barley | mitochondrion, plastid | 52.16 | 48.01 |
| Solyc04g079820.2.1 | Tomato | cytosol | 8.29 | 28.4 |
| Solyc12g019070.1.1 | Tomato | cytosol | 1.12 | 9.29 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:27.5.4.2 | Gene3D:3.60.10.10 | InterPro:Endo/exonu/phosph_ase_sf | InterPro:Endo/exonuclease/phosphatase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046856 | InterPro:IPPc | InterPro:IPR000535 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR036691 | UniProt:K4CJ88 | InterPro:MSP_dom | PFAM:PF03372 | PFscan:PS50202 |
| PANTHER:PTHR11200 | PANTHER:PTHR11200:SF137 | SMART:SM00128 | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF56219 |
| EnsemblPlantsGene:Solyc08g014580.2 | EnsemblPlants:Solyc08g014580.2.1 | UniParc:UPI000276B49E | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:4800265..4806601
Molecular Weight (calculated)
128424.0 Da
IEP (calculated)
6.722
GRAVY (calculated)
-0.412
Length
1158 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMDVVEKFE DDEKNALEGL SEAPPPRRKA HSYSHQLRTN TGTHHKRHHQ IRNHSLDVDY SINNAGLYED SSDEDEEDEG FYPYSMNSNE INTSINAATT
0101: NACASAAADR QDFHLMTQNF SGLGVIPDCL DDDQQLPLPE FAASGGGVGM FKVPTRAAVH PSRPSCHELR PHPLRETQVG RFLRTIACTD TQLWAGQECG
0201: VRVWNFSDQY EAGLGFNGRA KRGDEDAAPF YESVNTSPAI CLIADSGNKL VWSGHKDGKI RSWRMDQPNS DDSPFKEGLS WQAHRGSVLS MVISSYGDIW
0301: SGSEGGIIKV WPWESVEKSL SLSPEEKHMA ALLVERAAID LRTLVTVNGV CNISSSEVKC LLSDHVRAKV WAAGSLSFSL WDARNRELLK VYNVEGQIEN
0401: RVDISSVQDQ STEDDLNVKF VTKSKKEKSQ GSSFLQRSRN AIMGAADAVR RVATKGAFVE DSKKTEVLVL AADGMIWSGC SSGLLIQWDG NGNRLQDFHH
0501: HRCAVLCLCA HGSRIWVGYV SGMVQALDLD GNLLAGWVAH NGPVIKMAVG NDYVYSLANH GGIRGWNLTS PGPIDNILRP QLAEKENLYT SQENVRVLIG
0601: TWNVGQGRAS QEALATWLGS AVSDVGIIVV GLQEVEMGAG FLAMSAAKET VGLEGSSVGQ WWQDAIGKAL NEGSTFERVG SRQLAALLIA IWVRKSIRNH
0701: VGDLDVGAVA CGIGRAIGNK GGVGLRLRVF DRIMCFTNCH FAAHLEAVNR RNADFNHIFR TMVFTKSSSL LNNSAAGVSS SAQMLRGANT AQINPDEGRP
0801: ELGEADLVIF TGDFNYRLFG ISYDEARDFV SQRCFDWLRE KDQLRAEMKN GKVFQGMREA IIRFPPTYKF ERGKPGLGGY DSGEKKRIPA WCDRVLYRDN
0901: RATPSVECSL QCPVVASIIQ YEACMEVTES DHKPVRCKFH VEIAHVDRSV RRQMFGEIFR NNEKIKSLLQ EFRYIPETLV STSQIVLQNQ DTYNLRISSR
1001: SKEDKLFFQI TCGGQSTIKE DEQASEYHPR ASFGFPRWLE VTPASGIIKP DQAAEILVRH EEFNKLEETV DGIPQSWWCE DTRDKEVILL INVTASRSTE
1101: ARTHKVNVRH SFSANAVRTT SKSSSRRSQG GSSHHRSSFR HVGSGSESTT DPQSLRGL
0101: NACASAAADR QDFHLMTQNF SGLGVIPDCL DDDQQLPLPE FAASGGGVGM FKVPTRAAVH PSRPSCHELR PHPLRETQVG RFLRTIACTD TQLWAGQECG
0201: VRVWNFSDQY EAGLGFNGRA KRGDEDAAPF YESVNTSPAI CLIADSGNKL VWSGHKDGKI RSWRMDQPNS DDSPFKEGLS WQAHRGSVLS MVISSYGDIW
0301: SGSEGGIIKV WPWESVEKSL SLSPEEKHMA ALLVERAAID LRTLVTVNGV CNISSSEVKC LLSDHVRAKV WAAGSLSFSL WDARNRELLK VYNVEGQIEN
0401: RVDISSVQDQ STEDDLNVKF VTKSKKEKSQ GSSFLQRSRN AIMGAADAVR RVATKGAFVE DSKKTEVLVL AADGMIWSGC SSGLLIQWDG NGNRLQDFHH
0501: HRCAVLCLCA HGSRIWVGYV SGMVQALDLD GNLLAGWVAH NGPVIKMAVG NDYVYSLANH GGIRGWNLTS PGPIDNILRP QLAEKENLYT SQENVRVLIG
0601: TWNVGQGRAS QEALATWLGS AVSDVGIIVV GLQEVEMGAG FLAMSAAKET VGLEGSSVGQ WWQDAIGKAL NEGSTFERVG SRQLAALLIA IWVRKSIRNH
0701: VGDLDVGAVA CGIGRAIGNK GGVGLRLRVF DRIMCFTNCH FAAHLEAVNR RNADFNHIFR TMVFTKSSSL LNNSAAGVSS SAQMLRGANT AQINPDEGRP
0801: ELGEADLVIF TGDFNYRLFG ISYDEARDFV SQRCFDWLRE KDQLRAEMKN GKVFQGMREA IIRFPPTYKF ERGKPGLGGY DSGEKKRIPA WCDRVLYRDN
0901: RATPSVECSL QCPVVASIIQ YEACMEVTES DHKPVRCKFH VEIAHVDRSV RRQMFGEIFR NNEKIKSLLQ EFRYIPETLV STSQIVLQNQ DTYNLRISSR
1001: SKEDKLFFQI TCGGQSTIKE DEQASEYHPR ASFGFPRWLE VTPASGIIKP DQAAEILVRH EEFNKLEETV DGIPQSWWCE DTRDKEVILL INVTASRSTE
1101: ARTHKVNVRH SFSANAVRTT SKSSSRRSQG GSSHHRSSFR HVGSGSESTT DPQSLRGL
0001: MDIINNNHRD ENDDDEEEAL SAMSSVPPPR KIHSYSHQLR ATGQKGHHRQ RQHSLDDIPK ITEIVSGCGI SGDSSDDEFY PYATTTNSSS FPFTGGDTGD
0101: SDDYLHQPEI GEDFQPLPEF VGSGGGVGMF KVPTRSPLHS ARPPCLELRP HPLKETQVGR FLRNIACTET QLWAGQESGV RFWNFDDAFE PGCGLSGRVQ
0201: RGDEDAAPFQ ESASTSPTTC LMVDNGNRLV WSGHKDGKIR SWKMDYVLDD GDDSPFKEGL AWQAHKGPVN SVIMSSYGDL WSCSEGGVIK IWTWESMEKS
0301: LSLRLEEKHM AALLVERSGI DLRAQVTVNG TCNISSSEVK CLLADNVRSK VWAAQLQTFS LWDGRTKELL KVFNSEGQTE NRVDMPLGQD QPAAEDEMKA
0401: KIASTSKKEK PHGFLQRSRN AIMGAADAVR RVATRGGGAY EDAKRTEAMV LAGDGMIWTG CTNGLLIQWD GNGNRLQDFR HHQCAVLCFC TFGERIYIGY
0501: VSGHIQIIDL EGNLIAGWVA HNNAVIKMAA ADGYIFSLAT HGGIRGWPVI SPGPLDGIIR SELAEKERTY AQTDSVRILT GSWNVGQGKA SHDALMSWLG
0601: SVASDVGILV VGLQEVEMGA GFLAMSAAKE SVGGNEGSTI GQYWIDTIGK TLDEKAVFER MGSRQLAGLL ISLWVRKNLR THVGDIDVAA VPCGFGRAIG
0701: NKGGVGLRIR VFDRIMCFIN CHLAAHLEAV NRRNADFDHI YKTMSFTRSS NAHNAPAAGV STGSHTTKSA NNANVNTEET KQDLAEADMV VFFGDFNYRL
0801: FGISYDEARD FVSQRSFDWL REKDQLRAEM KAGRVFQGMR EAIITFPPTY KFERHRPGLG GYDSGEKKRI PAWCDRVIFR DTRTSPESEC SLDCPVVASI
0901: MLYDACMDVT ESDHKPVRCK FHVKIEHVDR SVRRQEFGRI IKTNEKVRAL LNDLRYVPET IVSSNSIVLQ NQDTFVLRIT NKCVKENAVF RILCEGQSTV
1001: REDEDTLELH PLGSFGFPRW LEVMPAAGTI KPDSSVEVSV HHEEFHTLEE FVDGIPQNWW CEDTRDKEAI LVVNVQGGCS TETVCHRVHV RHCFSAKNLR
1101: IDSNPSNSKS QSLKKNEGDS NSKSSKKSDG DSNSKSSKKS DGDSNSKSSK KSDGDSNSKS SKKSDGDSNS KSSKKSDGDS NSKSSKKSDG DSNSKSSKKS
1201: DGDSCSKSQK KSDGDTNSKS QKKGDGDSSS KSHKKNDGDS SSKSHKKNDG DSSSKSHKKS DGDSSSKSHK KSEGDSSSKS HKKNDGDSSS SYKSQSGKKN
1301: SNSSTVEESR NNHNKR
0101: SDDYLHQPEI GEDFQPLPEF VGSGGGVGMF KVPTRSPLHS ARPPCLELRP HPLKETQVGR FLRNIACTET QLWAGQESGV RFWNFDDAFE PGCGLSGRVQ
0201: RGDEDAAPFQ ESASTSPTTC LMVDNGNRLV WSGHKDGKIR SWKMDYVLDD GDDSPFKEGL AWQAHKGPVN SVIMSSYGDL WSCSEGGVIK IWTWESMEKS
0301: LSLRLEEKHM AALLVERSGI DLRAQVTVNG TCNISSSEVK CLLADNVRSK VWAAQLQTFS LWDGRTKELL KVFNSEGQTE NRVDMPLGQD QPAAEDEMKA
0401: KIASTSKKEK PHGFLQRSRN AIMGAADAVR RVATRGGGAY EDAKRTEAMV LAGDGMIWTG CTNGLLIQWD GNGNRLQDFR HHQCAVLCFC TFGERIYIGY
0501: VSGHIQIIDL EGNLIAGWVA HNNAVIKMAA ADGYIFSLAT HGGIRGWPVI SPGPLDGIIR SELAEKERTY AQTDSVRILT GSWNVGQGKA SHDALMSWLG
0601: SVASDVGILV VGLQEVEMGA GFLAMSAAKE SVGGNEGSTI GQYWIDTIGK TLDEKAVFER MGSRQLAGLL ISLWVRKNLR THVGDIDVAA VPCGFGRAIG
0701: NKGGVGLRIR VFDRIMCFIN CHLAAHLEAV NRRNADFDHI YKTMSFTRSS NAHNAPAAGV STGSHTTKSA NNANVNTEET KQDLAEADMV VFFGDFNYRL
0801: FGISYDEARD FVSQRSFDWL REKDQLRAEM KAGRVFQGMR EAIITFPPTY KFERHRPGLG GYDSGEKKRI PAWCDRVIFR DTRTSPESEC SLDCPVVASI
0901: MLYDACMDVT ESDHKPVRCK FHVKIEHVDR SVRRQEFGRI IKTNEKVRAL LNDLRYVPET IVSSNSIVLQ NQDTFVLRIT NKCVKENAVF RILCEGQSTV
1001: REDEDTLELH PLGSFGFPRW LEVMPAAGTI KPDSSVEVSV HHEEFHTLEE FVDGIPQNWW CEDTRDKEAI LVVNVQGGCS TETVCHRVHV RHCFSAKNLR
1101: IDSNPSNSKS QSLKKNEGDS NSKSSKKSDG DSNSKSSKKS DGDSNSKSSK KSDGDSNSKS SKKSDGDSNS KSSKKSDGDS NSKSSKKSDG DSNSKSSKKS
1201: DGDSCSKSQK KSDGDTNSKS QKKGDGDSSS KSHKKNDGDS SSKSHKKNDG DSSSKSHKKS DGDSSSKSHK KSEGDSSSKS HKKNDGDSSS SYKSQSGKKN
1301: SNSSTVEESR NNHNKR
Arabidopsis Description
Endonuclease/exonuclease/phosphatase family protein [Source:TAIR;Acc:AT2G43900]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.