Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002938.1-P | Field mustard | nucleus | 79.92 | 72.7 |
| CDY43016 | Canola | nucleus | 76.67 | 72.38 |
| Bra028997.1-P | Field mustard | nucleus | 76.48 | 72.33 |
| CDY61426 | Canola | nucleus | 76.48 | 71.81 |
| CDY19890 | Canola | nucleus | 56.41 | 68.76 |
| CDY67258 | Canola | nucleus | 56.21 | 68.37 |
| AT4G26930.1 | Thale cress | nucleus | 42.45 | 57.07 |
| HORVU7Hr1G105450.1 | Barley | nucleus | 22.18 | 34.94 |
| Zm00001d033075_P001 | Maize | nucleus | 24.28 | 34.14 |
| HORVU7Hr1G105520.2 | Barley | nucleus | 22.56 | 30.26 |
| TraesCS4A01G467100.1 | Wheat | nucleus | 16.25 | 30.04 |
| TraesCS7D01G446700.1 | Wheat | nucleus | 22.94 | 30.0 |
| TraesCS7B01G357900.1 | Wheat | nucleus | 22.75 | 29.75 |
| AT2G32460.1 | Thale cress | nucleus | 27.34 | 29.18 |
| AT2G26960.1 | Thale cress | nucleus | 23.71 | 29.04 |
| TraesCS6D01G126900.1 | Wheat | nucleus | 21.41 | 28.07 |
| KXG38121 | Sorghum | nucleus | 24.47 | 28.01 |
| Zm00001d013801_P001 | Maize | nucleus | 24.47 | 27.89 |
| HORVU7Hr1G027370.1 | Barley | nucleus | 22.75 | 27.87 |
| Zm00001d014364_P002 | Maize | nucleus | 21.22 | 27.61 |
| EER90224 | Sorghum | nucleus | 22.56 | 27.57 |
| Os06t0679400-01 | Rice | nucleus | 23.33 | 27.29 |
| HORVU6Hr1G026450.1 | Barley | nucleus | 20.84 | 27.25 |
| TraesCS7B01G031000.1 | Wheat | nucleus | 21.8 | 27.01 |
| TraesCS7D01G130100.1 | Wheat | nucleus | 21.8 | 26.76 |
| AT2G26950.1 | Thale cress | cytosol | 18.55 | 25.39 |
| AT5G06100.4 | Thale cress | nucleus | 25.05 | 25.19 |
| AT3G60460.1 | Thale cress | nucleus | 14.15 | 24.67 |
| Os03t0578900-00 | Rice | nucleus | 23.9 | 23.67 |
| AT3G11440.1 | Thale cress | nucleus | 24.67 | 23.33 |
| Zm00001d036577_P001 | Maize | nucleus | 19.89 | 20.35 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:835593 | ProteinID:AED96570.1 | EMBL:AF371979 | ArrayExpress:AT5G55020 |
| EnsemblPlantsGene:AT5G55020 | RefSeq:AT5G55020 | TAIR:AT5G55020 | RefSeq:AT5G55020-TAIR-G | EnsemblPlants:AT5G55020.1 | TAIR:AT5G55020.1 |
| Symbol:ATMYB120 | Unigene:At.9434 | ProteinID:BAB10576.1 | GO:GO:0000003 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009856 | GO:GO:0009860 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045893 | GO:GO:0048235 |
| GO:GO:0080092 | GO:GO:0090406 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EMBL:KC544014 | InterPro:Myb_dom |
| RefSeq:NP_568819.1 | PFAM:PF00249 | PO:PO:0025195 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF475 |
| UniProt:Q94FL7 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A3BA7 | SEG:seg |
Description
ATMYB120Transcription factor MYB120 [Source:UniProtKB/Swiss-Prot;Acc:Q94FL7]
Coordinates
chr5:-:22324599..22326418
Molecular Weight (calculated)
58220.5 Da
IEP (calculated)
10.004
GRAVY (calculated)
-0.898
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN WNAVQKNTGL ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG
101: NKWARMAAQL PGRTDNEIKN YWNTRLKRLL RQGLPLYPPD IIPNHQLHPH PHHQQQQQHN HHHHHHQQQQ QHQQMYFQPQ SSQRNTPSSS PLPSPTPANA
201: KSSSSFTFHT TTANLLHPLS PHTPNTPSQL SSTPPPPPLS SPLCSPRNNQ YPTLPLFALP RSQINNNNNG NFTFPRPPPL LQPPSSLFAK RYNNANTPLN
301: CINRVSTAPF SPVSRDSYTS FLTLPYPSPT AQTATYHNTN NPYSSSPSFS LNPSSSSYPT STSSPSFLHS HYTPSSTSFH TNPVYSMKQE QLPSNQIPQI
401: DGFNNVNNFT DNERQNHNLN SSGAHRRSSS CSLLEDVFEE AEALASGGRG RPPKRRQLTA SLPNHNNNTN NNDNFFSVSF GHYDSSDNLC SLQGKTKTTY
501: NTSNLNYSSL QVKCKMFMIK TQI
101: NKWARMAAQL PGRTDNEIKN YWNTRLKRLL RQGLPLYPPD IIPNHQLHPH PHHQQQQQHN HHHHHHQQQQ QHQQMYFQPQ SSQRNTPSSS PLPSPTPANA
201: KSSSSFTFHT TTANLLHPLS PHTPNTPSQL SSTPPPPPLS SPLCSPRNNQ YPTLPLFALP RSQINNNNNG NFTFPRPPPL LQPPSSLFAK RYNNANTPLN
301: CINRVSTAPF SPVSRDSYTS FLTLPYPSPT AQTATYHNTN NPYSSSPSFS LNPSSSSYPT STSSPSFLHS HYTPSSTSFH TNPVYSMKQE QLPSNQIPQI
401: DGFNNVNNFT DNERQNHNLN SSGAHRRSSS CSLLEDVFEE AEALASGGRG RPPKRRQLTA SLPNHNNNTN NNDNFFSVSF GHYDSSDNLC SLQGKTKTTY
501: NTSNLNYSSL QVKCKMFMIK TQI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.