Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38535 | Canola | nucleus | 37.17 | 32.87 |
| AT2G26960.1 | Thale cress | nucleus | 35.86 | 32.08 |
| CDX83247 | Canola | nucleus | 36.39 | 31.95 |
| Bra000531.1-P | Field mustard | nucleus | 35.86 | 31.49 |
| TraesCS4A01G467100.1 | Wheat | nucleus | 20.42 | 27.56 |
| CDX71481 | Canola | nucleus | 34.82 | 23.33 |
| HORVU7Hr1G105450.1 | Barley | nucleus | 20.16 | 23.19 |
| KRH18640 | Soybean | nucleus | 31.68 | 22.66 |
| PGSC0003DMT400015156 | Potato | nucleus | 29.32 | 22.31 |
| KRG89766 | Soybean | nucleus | 30.37 | 22.26 |
| Solyc06g073640.2.1 | Tomato | nucleus | 29.32 | 22.22 |
| Zm00001d033075_P001 | Maize | nucleus | 21.47 | 22.04 |
| VIT_06s0009g02480.t01 | Wine grape | nucleus | 30.1 | 21.95 |
| PGSC0003DMT400070549 | Potato | nucleus | 27.75 | 21.86 |
| AT3G60460.1 | Thale cress | nucleus | 16.75 | 21.33 |
| EER90224 | Sorghum | nucleus | 23.82 | 21.26 |
| Zm00001d014364_P002 | Maize | nucleus | 22.25 | 21.14 |
| AT4G26930.1 | Thale cress | nucleus | 21.47 | 21.08 |
| PGSC0003DMT400058426 | Potato | nucleus | 28.8 | 21.03 |
| Solyc01g009070.2.1 | Tomato | nucleus | 29.32 | 20.86 |
| TraesCS6D01G126900.1 | Wheat | nucleus | 21.47 | 20.55 |
| HORVU7Hr1G105520.2 | Barley | nucleus | 20.94 | 20.51 |
| TraesCS7D01G130100.1 | Wheat | nucleus | 22.77 | 20.42 |
| HORVU7Hr1G027370.1 | Barley | nucleus | 22.77 | 20.37 |
| TraesCS7D01G446700.1 | Wheat | nucleus | 21.2 | 20.25 |
| AT5G06100.4 | Thale cress | nucleus | 27.49 | 20.19 |
| TraesCS7B01G031000.1 | Wheat | nucleus | 22.25 | 20.14 |
| Os06t0679400-01 | Rice | nucleus | 23.56 | 20.13 |
| HORVU6Hr1G026450.1 | Barley | nucleus | 20.94 | 20.0 |
| TraesCS7B01G357900.1 | Wheat | nucleus | 20.94 | 20.0 |
| AT2G32460.1 | Thale cress | nucleus | 24.35 | 18.98 |
| KXG38121 | Sorghum | nucleus | 22.51 | 18.82 |
| AT5G55020.1 | Thale cress | nucleus | 25.39 | 18.55 |
| Solyc11g072060.1.1 | Tomato | nucleus | 25.92 | 18.33 |
| Zm00001d013801_P001 | Maize | nucleus | 21.99 | 18.3 |
| AT3G11440.1 | Thale cress | nucleus | 25.65 | 17.72 |
| Zm00001d036577_P001 | Maize | nucleus | 22.25 | 16.63 |
| Os03t0578900-00 | Rice | nucleus | 21.73 | 15.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:817236 | ProteinID:AAF13101.1 | ProteinID:AAF18614.1 | ProteinID:AAM15011.1 |
| ProteinID:AEC07910.1 | ArrayExpress:AT2G26950 | EnsemblPlantsGene:AT2G26950 | RefSeq:AT2G26950 | TAIR:AT2G26950 | RefSeq:AT2G26950-TAIR-G |
| EnsemblPlants:AT2G26950.1 | TAIR:AT2G26950.1 | Unigene:At.52930 | Symbol:AtMYB104 | EMBL:DR750464 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| RefSeq:NP_180263.5 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF540 | UniProt:Q9SM27 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001A7B019 | SEG:seg | : |
Description
MYB104Transcription factor MYB104 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM27]
Coordinates
chr2:-:11500721..11502136
Molecular Weight (calculated)
43514.9 Da
IEP (calculated)
4.896
GRAVY (calculated)
-0.719
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQDQANDLL AMKKTFTKSK WKPEEDRILK DYVIQYGDRT WTHVPKRTGL PHNPASCRFR WMNHLKPSLK KGPFTDEEEK RVLQLHAVLG NKWSQMAREF
101: PGRTDNEIKN FWNARRMRLK GKGLPVYPDE VREQAIRTAA QYGVKVELLN AHYSQDSLMA GNVEKPQELN NLALNQCSPY YQSTLANVQP SRNRVMEPET
201: TFPFTGGSAM NEQNPTLLCN PYVESTQEQL PDSHLFGNVT YSSPPMPLIH EVENLELPSF QGFDFHEEPS SFGAEQYNPM LNLEPHNTLV QSPLIGQTPT
301: DFPSSFYDEL LDELLESVVN GSLGEIPKTD TSSESQLFQS SLRSHTDATP DIANTTGYVG SNERNTTNDD DWIRLLLDEG FI
101: PGRTDNEIKN FWNARRMRLK GKGLPVYPDE VREQAIRTAA QYGVKVELLN AHYSQDSLMA GNVEKPQELN NLALNQCSPY YQSTLANVQP SRNRVMEPET
201: TFPFTGGSAM NEQNPTLLCN PYVESTQEQL PDSHLFGNVT YSSPPMPLIH EVENLELPSF QGFDFHEEPS SFGAEQYNPM LNLEPHNTLV QSPLIGQTPT
301: DFPSSFYDEL LDELLESVVN GSLGEIPKTD TSSESQLFQS SLRSHTDATP DIANTTGYVG SNERNTTNDD DWIRLLLDEG FI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.