Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009070.2.1 | Tomato | nucleus | 91.2 | 88.83 |
| PGSC0003DMT400015156 | Potato | nucleus | 60.42 | 62.95 |
| PGSC0003DMT400070549 | Potato | nucleus | 43.98 | 47.42 |
| VIT_06s0009g02480.t01 | Wine grape | nucleus | 44.93 | 44.85 |
| KRG89766 | Soybean | nucleus | 40.54 | 40.69 |
| KRH18640 | Soybean | nucleus | 41.49 | 40.64 |
| HORVU7Hr1G105450.1 | Barley | nucleus | 22.37 | 35.24 |
| CDY38535 | Canola | nucleus | 27.92 | 33.8 |
| Bra000531.1-P | Field mustard | nucleus | 28.11 | 33.79 |
| Zm00001d033075_P001 | Maize | nucleus | 23.9 | 33.6 |
| CDX83247 | Canola | nucleus | 27.92 | 33.56 |
| HORVU7Hr1G027370.1 | Barley | nucleus | 26.96 | 33.02 |
| TraesCS7D01G130100.1 | Wheat | nucleus | 26.58 | 32.63 |
| TraesCS7B01G031000.1 | Wheat | nucleus | 25.81 | 31.99 |
| AT2G26960.1 | Thale cress | nucleus | 26.0 | 31.85 |
| EER90224 | Sorghum | nucleus | 25.81 | 31.54 |
| HORVU7Hr1G105520.2 | Barley | nucleus | 23.52 | 31.54 |
| Zm00001d014364_P002 | Maize | nucleus | 24.09 | 31.34 |
| PGSC0003DMT400036086 | Potato | nucleus | 28.49 | 31.3 |
| TraesCS7B01G357900.1 | Wheat | nucleus | 23.9 | 31.25 |
| TraesCS4A01G467100.1 | Wheat | nucleus | 16.83 | 31.1 |
| TraesCS7D01G446700.1 | Wheat | nucleus | 23.71 | 31.0 |
| PGSC0003DMT400074486 | Potato | nucleus | 28.68 | 30.99 |
| Zm00001d013801_P001 | Maize | nucleus | 26.39 | 30.07 |
| HORVU6Hr1G026450.1 | Barley | nucleus | 22.56 | 29.5 |
| TraesCS6D01G126900.1 | Wheat | nucleus | 22.37 | 29.32 |
| KXG38121 | Sorghum | nucleus | 25.62 | 29.32 |
| AT2G26950.1 | Thale cress | cytosol | 21.03 | 28.8 |
| Os06t0679400-01 | Rice | nucleus | 24.47 | 28.64 |
| CDX71481 | Canola | nucleus | 28.68 | 26.32 |
| PGSC0003DMT400066066 | Potato | nucleus | 14.34 | 24.51 |
| Os03t0578900-00 | Rice | nucleus | 24.67 | 24.43 |
| Zm00001d036577_P001 | Maize | nucleus | 23.33 | 23.87 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102599237 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1C2L6 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400022689 | PGSC:PGSC0003DMG400022689 | EnsemblPlants:PGSC0003DMT400058426 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF540 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002948BDD | RefSeq:XP_015158630.1 | SEG:seg |
Description
GAMyb-like1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022689]
Coordinates
chr1:-:5506259..5511434
Molecular Weight (calculated)
57335.3 Da
IEP (calculated)
5.021
GRAVY (calculated)
-0.543
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MSITSETEER MTSKVDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN AVQRHSGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI
101: VELHAKMGNK WARMAVELPG RTDNEIKNYW NTRIKRRQRA GLPIYPPDIS FLVSQNKQNE ELGAFSSADA QNSDVLGINN FEIPAVEFKK LELNHLLYPP
201: QLADIPARSL LNDPVNNFLA QGHRAPYSST YFLSTTYPSK RMRGSESVFS GSNSDLLNSL QYQNDSSLLA QPLGFSSYSH NLTYDDNRSF SSVVPGGHAY
301: LNGNSSSEPT WAMKLELPSL QNQTENWGSP HLALPSLDSV DILIQSPPAG HSESGSLSPS NSGLLDAVLH ESQTMNASHD NSHQGNETSG VAVNNSCPDL
401: KGWDGHPISP LSQFSASVFS EYTPISESSL HEFLSMTTMP GCKIKQEIVD LAPLDEEDDT SNQTIFSSPK TQHANNHLAS KDALISCFFD DCAWDCKQLH
501: AVATSSGQAS GHNSCSWDAM SAV
101: VELHAKMGNK WARMAVELPG RTDNEIKNYW NTRIKRRQRA GLPIYPPDIS FLVSQNKQNE ELGAFSSADA QNSDVLGINN FEIPAVEFKK LELNHLLYPP
201: QLADIPARSL LNDPVNNFLA QGHRAPYSST YFLSTTYPSK RMRGSESVFS GSNSDLLNSL QYQNDSSLLA QPLGFSSYSH NLTYDDNRSF SSVVPGGHAY
301: LNGNSSSEPT WAMKLELPSL QNQTENWGSP HLALPSLDSV DILIQSPPAG HSESGSLSPS NSGLLDAVLH ESQTMNASHD NSHQGNETSG VAVNNSCPDL
401: KGWDGHPISP LSQFSASVFS EYTPISESSL HEFLSMTTMP GCKIKQEIVD LAPLDEEDDT SNQTIFSSPK TQHANNHLAS KDALISCFFD DCAWDCKQLH
501: AVATSSGQAS GHNSCSWDAM SAV
001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC
Arabidopsis Description
ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.