Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073640.2.1 | Tomato | nucleus | 97.81 | 97.42 |
| PGSC0003DMT400058426 | Potato | nucleus | 62.95 | 60.42 |
| PGSC0003DMT400070549 | Potato | nucleus | 50.2 | 51.96 |
| VIT_06s0009g02480.t01 | Wine grape | nucleus | 48.8 | 46.76 |
| KRG89766 | Soybean | nucleus | 44.42 | 42.8 |
| KRH18640 | Soybean | nucleus | 44.82 | 42.13 |
| HORVU7Hr1G105450.1 | Barley | nucleus | 23.71 | 35.84 |
| CDY38535 | Canola | nucleus | 30.08 | 34.95 |
| Bra000531.1-P | Field mustard | nucleus | 30.28 | 34.94 |
| CDX83247 | Canola | nucleus | 30.08 | 34.71 |
| TraesCS4A01G467100.1 | Wheat | nucleus | 18.92 | 33.57 |
| Zm00001d033075_P001 | Maize | nucleus | 24.5 | 33.06 |
| AT2G26960.1 | Thale cress | nucleus | 27.69 | 32.55 |
| PGSC0003DMT400036086 | Potato | nucleus | 30.68 | 32.35 |
| HORVU7Hr1G027370.1 | Barley | nucleus | 26.89 | 31.62 |
| PGSC0003DMT400074486 | Potato | nucleus | 29.88 | 30.99 |
| TraesCS7D01G130100.1 | Wheat | nucleus | 26.29 | 30.99 |
| HORVU7Hr1G105520.2 | Barley | nucleus | 23.9 | 30.77 |
| Zm00001d014364_P002 | Maize | nucleus | 24.5 | 30.6 |
| TraesCS7B01G031000.1 | Wheat | nucleus | 25.7 | 30.57 |
| TraesCS7D01G446700.1 | Wheat | nucleus | 24.1 | 30.25 |
| EER90224 | Sorghum | nucleus | 25.7 | 30.14 |
| TraesCS7B01G357900.1 | Wheat | nucleus | 23.9 | 30.0 |
| HORVU6Hr1G026450.1 | Barley | nucleus | 23.71 | 29.75 |
| TraesCS6D01G126900.1 | Wheat | nucleus | 23.51 | 29.57 |
| AT2G26950.1 | Thale cress | cytosol | 22.31 | 29.32 |
| Zm00001d013801_P001 | Maize | nucleus | 25.5 | 27.89 |
| KXG38121 | Sorghum | nucleus | 25.1 | 27.57 |
| Os06t0679400-01 | Rice | nucleus | 24.1 | 27.07 |
| CDX71481 | Canola | nucleus | 30.68 | 27.02 |
| Os03t0578900-00 | Rice | nucleus | 26.1 | 24.81 |
| PGSC0003DMT400066066 | Potato | nucleus | 14.94 | 24.51 |
| Zm00001d036577_P001 | Maize | nucleus | 23.31 | 22.9 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400015156 | EnsemblPlantsGene:PGSC0003DMG400005918 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF475 | PFAM:PF00249 | PFscan:PS51294 | PGSC:PGSC0003DMG400005918 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000295D89B | UniProt:M1A5J5 | MapMan:15.5.2.1 | : | : |
Description
GAMYB-like2 [Source:PGSC_GENE;Acc:PGSC0003DMG400005918]
Coordinates
chr6:-:54228199..54235466
Molecular Weight (calculated)
55002.1 Da
IEP (calculated)
5.666
GRAVY (calculated)
-0.582
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSESDDRMT SLDGVDSPSV EEACGGGNTG GGLPLKKGPW TSAEDAILVE YVTKHGEGNW NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERH
101: IIELHAKMGN KWARMAAELP GRTDNEIKNY WNTRIKRRQR AGLPIYPSDI CFQSITENKQ NEELGTFSSA DSQYPDFLPM NYEIPAVEFK RLEFNQHLCP
201: PVLLDIPTGG ILDIPGRSLL AQGLNSAYYS RSFLSTTPPA KRIRGSESLF SGLNGDCSPS KNDGSFPTCH QHQDDGSLLA QSMGFSSSFN QNLTSDYHPS
301: SLGVIPGSHA LLNGHTSSSE PSWAKKLELP SLQSPIASWG LLTSPLPSLD SVDTLIQSPP TEHTEPCNLS PRNSGLLDAV LHESQTMRAS KSILHQENSG
401: DVVDNSCPDL HMTEWGQHGD PISPLGHSAA SVFSEYTPTS GSSSEEPQLV TMPACKVKQE KFDYGPYDGK DDASNLISPR PDFLLESNCF GHMQNTVRSI
501: WY
101: IIELHAKMGN KWARMAAELP GRTDNEIKNY WNTRIKRRQR AGLPIYPSDI CFQSITENKQ NEELGTFSSA DSQYPDFLPM NYEIPAVEFK RLEFNQHLCP
201: PVLLDIPTGG ILDIPGRSLL AQGLNSAYYS RSFLSTTPPA KRIRGSESLF SGLNGDCSPS KNDGSFPTCH QHQDDGSLLA QSMGFSSSFN QNLTSDYHPS
301: SLGVIPGSHA LLNGHTSSSE PSWAKKLELP SLQSPIASWG LLTSPLPSLD SVDTLIQSPP TEHTEPCNLS PRNSGLLDAV LHESQTMRAS KSILHQENSG
401: DVVDNSCPDL HMTEWGQHGD PISPLGHSAA SVFSEYTPTS GSSSEEPQLV TMPACKVKQE KFDYGPYDGK DDASNLISPR PDFLLESNCF GHMQNTVRSI
501: WY
001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC
Arabidopsis Description
ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.